Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03471 ATGGAACAAACTGAGGATAAAAATACTGGTGCAGAGGATCCAAATAGATCTAAATCTCCCAGTTATCAGAATTTGGATTCTGATAAGATTCCTGAAGGTTACAAAAAGATAAGTGAACTAATAGATGAGGATATTAGAGGGCTTGAGTTTGATTCTGAAGAGGATGCATATGTTTTCTATCATGAGTATGCTAAATTCGTAGGGTTTGCTGTTAGAAAACATGATGTGTATAGGGACCGTAATGATGTAATTACTATGAGGCAAATGGTATGTAACAAAGAAGGTGAGAGAAGTGAGAAGCATCTTAATAGGTCTGATAGAATTAGGGAGGCAAAGCCATTGACAAGAACAAATTGTAAAGCAAGAATTCGTGTTTCTTTAGATTATAAGAGTAGGAAGTGGAGGGTTGTAATGTTTAAGCCGACTCATAACCATGAATTTACTCCTGCAAGTATGATACATCTTTTACCGGCATATCGTGGTTTAAGTGTAGCTGATAAGGCTCAGGTTGATGGTCTTCATGTTTATGGTGTTAGAACTTGCCATATTATGGGTCTGATAATGGGACAGAAAGGTGATTATTCTAATCTTGGATTATGTAAGAAGGATTTGTACAAACATGTTGATAAAGAGAATAGGGCAAAAATAGAGGATGGTGATGCTTTTGCGGCATTGTGTTACCTTCAAGCAAAATTTGACAACAATCCAATGACATTTGTAAAATTTACAACCACTGAAGATCATAGACTTGAAAACTTGTTTTGGGCTGATGTAGGGAGTAGAATTGATTATATTTGTTTTGGAGATGTGGTTACCTTTGACACAACTTATAAGAAAATGTTTAATAAAGTTCCTAAGGTTGTGGTTACTGATGGGGATGGTGCAATGCGTGAAGCAATAAGGTCTGTTTTCCCTGGTGCTCTTCATAGGTTATGTGCATGGCACCTTCACCAAAATGCTTGTGAGAATGTTAAGAATCCCAAATTCCTTGAAGATTTTAAATCTTTAATTTATGGGAATTTTACTCGTGAGAAATTTGAGGATGAATGGAACAGAGTTGTTGATACCCATGGTTTGAGAGAAAATAGGTGGATTAGAAAAGTATATGATTTGAAGAGGATGTGGGCCACTGCATATCTAAGGGAAAATTTTTTTGGGGGGATTAGGACAACTTCTATATGTGAAGGAATTAACTCTTTCATTAAGAGGTATGTTCAGAGCAAAAATAGCCTTGTTGACTTTCTACACAATTTTGAGAGAGCACTCAATGAGTACAGACACAATGAGTTAACTTCATATTTCAAATCTACTTATACTCAACCTGTGATGACAACTGCATTGGAAAAGTATGAATTTCAAGCATGTAATGTCTACACAAGAAATAAGTTTTTTGATGTTCGGAAGCAAATTGAGAAAGTTGCTGCCATAAATGTAATTGATAGGTCAGATGTTGGGAATGTGGTTACAATGAAGTTGAATAAATTTGGAAGTCCTGATTCTGAGTATATTGTTAAGCTGGATAAGTGTGCTGGTAATTTGGTTTGTAATTGTCGCATGTTTGAATCTTGTGGCATCCCTTGTTCACACATTTTTAGTGCTATGAAGCATGAGCATTGA 1617 0.3575 MEQTEDKNTGAEDPNRSKSPSYQNLDSDKIPEGYKKISELIDEDIRGLEFDSEEDAYVFYHEYAKFVGFAVRKHDVYRDRNDVITMRQMVCNKEGERSEKHLNRSDRIREAKPLTRTNCKARIRVSLDYKSRKWRVVMFKPTHNHEFTPASMIHLLPAYRGLSVADKAQVDGLHVYGVRTCHIMGLIMGQKGDYSNLGLCKKDLYKHVDKENRAKIEDGDAFAALCYLQAKFDNNPMTFVKFTTTEDHRLENLFWADVGSRIDYICFGDVVTFDTTYKKMFNKVPKVVVTDGDGAMREAIRSVFPGALHRLCAWHLHQNACENVKNPKFLEDFKSLIYGNFTREKFEDEWNRVVDTHGLRENRWIRKVYDLKRMWATAYLRENFFGGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELTSYFKSTYTQPVMTTALEKYEFQACNVYTRNKFFDVRKQIEKVAAINVIDRSDVGNVVTMKLNKFGSPDSEYIVKLDKCAGNLVCNCRMFESCGIPCSHIFSAMKHEH. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03471 538 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 534 IPR031052 GO:0006355
Seca4g03471 538 MobiDBLite consensus disorder prediction 1 29 - -
Seca4g03471 538 Pfam MULE transposase domain 272 319 IPR018289 -
Seca4g03471 538 ProSiteProfiles Zinc finger SWIM-type profile. 502 538 IPR007527 GO:0008270
Seca4g03471 538 Pfam FAR1 DNA-binding domain 59 148 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03471 Seca-Chr4 60449417 60451169 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03471 FAR1 1.9e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03471 - - tpra:123910662 584.719