Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03462 ATGATGAAATTTCATTTCTCAAACATTGAGTGTGCATTTCAATTTTACAACTGGTTTGGAAAAAGGAGAGGTTTCTCTGCTAGGAGAGGTAAGGAACGCAAAGACAAGAATGAAGAAATAGTGGAGAAGACATTTTTTTGTCACAGGGAAGGAAAACGACGGAAAAGGAAATGTGTTAAGGGAGTGAGGAAGTCTAAGCCTGAGACGAGAAATGGTTGTCTTGCAAAATTGAAGATTCGAGTTCTCAAACAAACAGGTCGTTGGCACGTGACCTCTTTCTGTAATGAGCATAACCATCCATTGGTGCTGCCTAAATTTACAAAGGTGTTGCCTGCACACCGGAGAATGACTGATGCTGACATAATGCAAATGAACAACATGCGAAAGGCAGGAATTAGCACACCTCAAATTTATGGTTCATTTGCTAGTCAATGTGGTGGTTTTGAACATGTTGGTTTTAGCAAGCGGGACATGTATAATCAAATTGTGAAGCAAAGGTCATTTAGAGAATCTGATGTGAAGAGTGCCTTGCAGTATCTTCGAAAAATTGCTGAAATTGATGAAGCATTGGCATGTAGGCATACAGTGGATGAAAAAGGTAGACTCCAACGCCTTTTTTGGTGTGATGGGCATAGTCAGGTGGATTACAAATTGTTTGGTGATGTATTAGCATTTGATGCCACGTATCAAAGGAACAAATACCACTATCCGTTAGTGGTATTTTCGGGTATCAACCATCACAACCAGTCTATAATATTTGCTACTACGCTAGTTGGGGATGAGACAGAAGAAACCTATGTGTGGTTGCTTCAACAGTTTTTGGTGGTTATGAAAGGCAAGTGTCCTACAGCTGTAATAACTGATGGAGATGTTGCTATGAGGAATGCCATAAGGAGAGTTTTTCCGAATGCCTCTCATAGGTTGTGCGCGTGGCACCTTATACGTAATGCCACTAGCAATGTTAAAAACCCCAAAGTGGTAGCTGAGTTCAAGAGATGTATGTTGGGCGATTATGAGTTGCACCAGTTTCATCGTAAGTGGGAAACGATGGTAAGAGATTTTGGTCTTGAAGACAATTCTTGGGTGAAGGAGATTTTTGAGAAAAGGAGGATGTGGGCAACAGCGTATATGAGGGCTAGATTCTTTGGTGGGTTTAGGATGACCTCTAGATGTGAGGGTTTGCATTCTCATATTGGTAAGTTTGTGCACTCTCGACATGATTTGGCAGATTTTTTGGAGAATTTTCGCCATTGTCTAGATGCATTTCGATATAGGGAATTAGAGGCTGACTTTGCCTCAGTTAATGGTGAACCAATTATGCAAACCAATATTAAAGTATTGGAGAAGTCTGCATGTAGGAGCTTTACTTGGGAGGTGTTCACTTTATTTCTACCAGCTCTTGCTAGGGGCAGCACGGTGAGGGTGAAGAGTTCCACTACATTGATGTCTCAGACAATATTCACTGTGACCAAGTATGGGAGGGCAGGTAATGAGTGGCATGTGTCTTGGATGCCTAATCCATTTCAAATTAGATGTTCATGTAAGAGGATGGAGTCTTTTGGTCTTCCATGTGACCACATTGTTGGTGTTCTTGTCCATTTAAACATTGAGGAAATGCCAAAATGTCTAGTACTAGATAGGTGGACAATGGGTATCAAGGAAAAGATACACGAGTGTAATGTTGATCAAAACACTGTGTGGGACTCTGTATATTTGGCTAGGTGTGGTGCATTGGATTGGTTATGTCGACTAATGACTAGAAAATGTGCCAGGTCAACTATGAAATATAATGTTACAAGAGATTTAGTTACAAGGCATTTACAATGGTTAGGGGAAAGTGATGAAGGTATTGGTGATGAGAATGAAAAACCTGAAGAACGTGAGATTATTAGGGACCCGGTGAGAGTTGGGAGTAAGGGTTGTGCTGCTACTTCAACATCTCAACCTTTGAAATCAAGGAAGCGTCAGCGGTGCAGGTTATGTGGAGAGGTAGGCCATAATCGAACCACATGCTCTACTATAAGAAGACAGTATGAACATGTGTTATCTCAACAAGAGCCATTTGATGAAGCTGTAAGTTTAGCAGAGGATTGTTTATCATTTTAA 2106 0.4088 MMKFHFSNIECAFQFYNWFGKRRGFSARRGKERKDKNEEIVEKTFFCHREGKRRKRKCVKGVRKSKPETRNGCLAKLKIRVLKQTGRWHVTSFCNEHNHPLVLPKFTKVLPAHRRMTDADIMQMNNMRKAGISTPQIYGSFASQCGGFEHVGFSKRDMYNQIVKQRSFRESDVKSALQYLRKIAEIDEALACRHTVDEKGRLQRLFWCDGHSQVDYKLFGDVLAFDATYQRNKYHYPLVVFSGINHHNQSIIFATTLVGDETEETYVWLLQQFLVVMKGKCPTAVITDGDVAMRNAIRRVFPNASHRLCAWHLIRNATSNVKNPKVVAEFKRCMLGDYELHQFHRKWETMVRDFGLEDNSWVKEIFEKRRMWATAYMRARFFGGFRMTSRCEGLHSHIGKFVHSRHDLADFLENFRHCLDAFRYRELEADFASVNGEPIMQTNIKVLEKSACRSFTWEVFTLFLPALARGSTVRVKSSTTLMSQTIFTVTKYGRAGNEWHVSWMPNPFQIRCSCKRMESFGLPCDHIVGVLVHLNIEEMPKCLVLDRWTMGIKEKIHECNVDQNTVWDSVYLARCGALDWLCRLMTRKCARSTMKYNVTRDLVTRHLQWLGESDEGIGDENEKPEEREIIRDPVRVGSKGCAATSTSQPLKSRKRQRCRLCGEVGHNRTTCSTIRRQYEHVLSQQEPFDEAVSLAEDCLSF. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03462 701 ProSiteProfiles Zinc finger SWIM-type profile. 487 535 IPR007527 GO:0008270
Seca4g03462 701 Pfam MULE transposase domain 222 316 IPR018289 -
Seca4g03462 701 SMART 26again6 510 537 IPR006564 GO:0008270
Seca4g03462 701 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 600 IPR031052 GO:0006355
Seca4g03462 701 Pfam FAR1 DNA-binding domain 14 102 IPR004330 -
Seca4g03462 701 Pfam SWIM zinc finger 501 535 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03462 Seca-Chr4 60311962 60314067 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03462 MULE 3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03462 - - tpra:123913749 690.649