Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03460 ATGAGCAGGATAATCAGTTTTCTTAGCGCTTGCTCTGCAGGTTCACTCACTTTCCCTCTGAGTTTCTTTCTTGTACTTTTTTATGAATATATGATGGAAAAGAGAAACTTTTCTGAATTCATATCAGAGCTAATAGCTCTGGGCGATGAGGTTGTTTCGTTTACTAAGAATCATGAAATTGTCATAGACGCTTTTTCTCAGTTTGCCATGTTGGTTGAGAAATTTGCACCAATCTTCAATGATTTGAGGAACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCGTTGGAATCTCTTGAGAATGAGCTTCACCGTGCTAAAGTTTTGATCAAAAGTCACCATTTGGGAGAGCCTATCCAACAAATTGAGGACATAACGCATGATCTTGGTCGATCATTAGGCCTGCTCCTTGTGGCTAGTCTTGAACTTGAAGTGTCCATAAGTTTTAGAGAAAAGATTAGTACATTGCAAAAACAGTTGATGAATGCAAGATTTGGTGGGAATACCAATCTAACTTCAAGTCCAATATCAAAGTTTGTCATTGCCAGTGATGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAATTAATGTTACTATTGATGATATTGTACTGCAACTTAAGAATGGTGATGCTGAAGAATTTGCAGTTGCACTTTTAAGACTAAAGAAGTTCATCAGGGATGGACAACTGGATAGTAGTGTAATTAATGAGGAAGCTGTTCTTTTAATTCTTTTTAATCGTCTAAGTTCATGTAAGGCATATAGGCTGACCATCATTCAATTGCTACGAAGCATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGACAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTAGCAAGGGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGTTAGAGCTCTCTCACATTCCTGCAGTTAGACGGCATATTGGAAGAATTAAGGGGTGTATTGTTATGTTAGTTTCTATCCTGAATGGAATTGACCCTGTTGCTTCAAATGATGCAGCAAAGTTGTTGGATATATTATCCAGTAATACTCAAAATGCACTCAATATGGCTGAGGCTGGTTACTTTAGGCCACTAGTGCAGTATTTGAAGAAAGGGTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGATGCTTACTGATCATAGCAAGCTTTCCCTTGGACGAGATGGGGCAATTGAGTCCCTTGTCAAAATGTTTAATTCTGGGAAACTTGAGTCCAAGTTATCTGCTCTAAATGCACTGCAAAATCTTTCCAGTTTGACAGAAAATGTGCAGCGTCTCATCAGAACTGGAATTGCAGGATCTCTACTGCAACTTCTTTTTTCTGTAACATCTGTGCTCATGATTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGCATTGCTCAGTCAGAATCCTTTCTTGTTAATCAAGATGTGTCTCAACAAATGCTTTCACTTTTGAATCTTACCTGCCCAGTAATTCAAGGTAATCTTTTAGAAGCTCTAAATAGCATTGCTTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAATGTGCACTTGAGCTAATTTTACCCCTTCTGAAGGAAACCAGAACTGAAATACGGAGCAAGGCCTTGAATTTGCTGTATACTCTCTCCAAAGATCTAACAGATGAGTTGAGTGAACATCTTGATGAAGCTCATCTTTTCAACATTGTTAATATTGTCTCATCAACAACATCAGATAGTGAAAAGTCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTCATGATAATAAAGTGACAGATGCACTGAAGAGAGCAAATTTGTTGCCACTTTTAGTATCCATTATGGATTCAAGCACAGGAAGTAACTCGCGCACAAGATGCAGCATAATGGAGAGTATTGCAGGTATTATAATCCGATTCACACGTTCCTCTGACAAGAAACTACAACGTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAACAATCACAAAATTCAGAGCTGCAACCTCTCTGGCTCAACTATCACAGAATTCTGTGTCTCTTAAGAGGTCTAAGAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAATGGATGCATACTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATGAGGAAGCAGTGGAAGCTGCCCTTATTTCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGTGGTGTTAATTGCATAGCTAAATTGTCAGGTGTAGAGGCTATTGTAAAAATTTTAGCAGTAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATAAAATATGGAGAATCCGCTCAGGTGGTTCTTATTGATTTGGCACAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2583 0.3953 MSRIISFLSACSAGSLTFPLSFFLVLFYEYMMEKRNFSEFISELIALGDEVVSFTKNHEIVIDAFSQFAMLVEKFAPIFNDLRNKSTIMDKPAIRKSLESLENELHRAKVLIKSHHLGEPIQQIEDITHDLGRSLGLLLVASLELEVSISFREKISTLQKQLMNARFGGNTNLTSSPISKFVIASDVKVEGEIEEEIINVTIDDIVLQLKNGDAEEFAVALLRLKKFIRDGQLDSSVINEEAVLLILFNRLSSCKAYRLTIIQLLRSIALGNDETKEKMTDIEFLSAVVKSLARDAEERREAVGLLLELSHIPAVRRHIGRIKGCIVMLVSILNGIDPVASNDAAKLLDILSSNTQNALNMAEAGYFRPLVQYLKKGSDMNKILMATALSRLMLTDHSKLSLGRDGAIESLVKMFNSGKLESKLSALNALQNLSSLTENVQRLIRTGIAGSLLQLLFSVTSVLMILREPASAILASIAQSESFLVNQDVSQQMLSLLNLTCPVIQGNLLEALNSIASHPGASKVRRKMKEKCALELILPLLKETRTEIRSKALNLLYTLSKDLTDELSEHLDEAHLFNIVNIVSSTTSDSEKSAAVGILSNLPVHDNKVTDALKRANLLPLLVSIMDSSTGSNSRTRCSIMESIAGIIIRFTRSSDKKLQRLSAEHGVIPLLVKLLSSGSTITKFRAATSLAQLSQNSVSLKRSKKSRWLCVPPSMDAYCEVHDGYCFVNSTFCLVKAGAVSPLIQILEDKDEEAVEAALISLSTLLQDEIWEGGVNCIAKLSGVEAIVKILAVGDVKVQEKALWMLERIFRVEEHRIKYGESAQVVLIDLAQKSDSRLKSTVAKVLAVLELLQAQSSYF. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03460 860 Gene3D - 203 522 IPR011989 -
Seca4g03460 860 Gene3D - 725 858 IPR011989 -
Seca4g03460 860 SUPERFAMILY ARM repeat 384 815 IPR016024 -
Seca4g03460 860 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 406 448 IPR000225 GO:0005515
Seca4g03460 860 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 173 860 - -
Seca4g03460 860 SMART arm_5 521 561 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 772 812 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 354 394 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 656 696 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 606 653 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 272 311 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 395 435 IPR000225 GO:0005515
Seca4g03460 860 SMART arm_5 728 768 IPR000225 GO:0005515
Seca4g03460 860 Gene3D - 523 708 IPR011989 -
Seca4g03460 860 SUPERFAMILY ARM repeat 196 458 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03460 Seca-Chr4 60209316 60213734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03460 212 860 U-box Gene Family AT1G76390 28.736 8.04e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03460 K08332 - gmx:102659538 1180.62