Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03459 ATGAAGGACGCAGATGTGTCAAGGCAGATCCAGCAGATGATTAGGTTCATCCGCCAAGAGGCTGAGGAGAAAGCTAATGAAATTTCTGTTGCCGCAGAGGAGGAATTCAATATTGAGAAACTACAATTACTTGAAGCTGAAAAGAGAAAGATAAGACAAGAGTACGAACGAAAAGCCAAACAAATTGACATTCGTAGAAAGATTGAATACTCCATGCAGCTGAATGCAGCAAGAATAAAGGTACTCCAAGCACAAGATGAGGCGGTGAATTCTATGAAGGATGCTGCTAAAAAGGCTCTTTTACGTGTCTCAAATGATAAGAAATTATACAAGAAACTCCTCAAAGACATGATTGTTCAGGGTTTACTACGCCTGAGGGAACCATCTGTGCTACTAAGATGCAGAGAGGGTGACCGTAAGCTAGTTGAGTCATTGCTAGAGGAAGCCAAAAAAGAATACACAGAAAAAGCCAAAATGCAAGCACCTAAGATTATCCTTGATGATCGTGTTTACCTCCCACCACCTCCTAAAAACGGTGCTGTGGATTCCCATGAACAATTCTGCTCTGGAGGAGTGGTATTGGCCTCGGAGGATGGGAAGATAGTGTTGGAGAACACCCTTGATGCAAGGCTTGATGTTATCTTCCGGCAGAAACTACCTGAGGCATGTTCATTCACCCACACTCCTTCCATTCATTTCAACATTTTACCTTGGTACTGCAAATGGTTATTTATCGTTGTTACTCAATTAAAACGTCCTTGGCTTGCAGACACAAGGAGAAGAATGGAAGCTGTTTTCATCACCAAACCATCTTCTCACTTCAAAATCAAACTCCCTCCCAATCCCAAACTAACATTCCCTTCAGGTCACCAATCGCTCCCTCTTCGTCACAAACCCACCCACTTTCTCACCGTCTCCGCCGCACTCCAAAACCAGCAACAACAGCAAGCGGCACCCAAAGACAGCAGCAGCGAAGATGAGTCCTACGGCGAAGTCAAAAAAATCATCGGCAGCAATGCCCTCGACGGCGCCGCCGGCATGGAATACCTCATCGAATGGAAAGACGATCATGCTCCTTCTTGGGTTCCCGCCGATTTCATAGCCAAAGACGTCATCGCCGAGTACGAAACTCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGAACCTCGTCGACGCCGATGACGGCCGCGACATCGACGCTGTGGACGCCGACGGCCGAACCGCGCTCCTCTTCGTCGCTGGACTCGGTTCGGAGCCCTGCGTCCGGATTCTAGCCGAAGCCGGCGCGAATCTGGACCACCGTGACAACGCCGGCGGCCTGACGGCGCTGCACATGGCGGCGGGGTACGTGAGGCCTGGCGTGGCGAAGCTGCTTCTGGAGCTCGGAGCGGAACCTGAGGTAGAAGATGATCGTGGAAGGACGGCGCTGGATCTGGCAAGGGAGATTCTGAAGGCGACGCCGAAGGGGAACCCGATGCAATTCGGGCGACGAGTGGGGTTGGAGGGTGTGATTAGGGTTTTGGAAGGTGCGATATTCGAGTACGCAGAAGTGGAAGAGATTTTGGAAGAGAGGGGGAAGGGTGAGAATTTGGAGTACCTTGTGCGGTGGAAGGATGGTGGTGCAAACGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAGAAGTACGAGGCTGGGGCTTGA 1704 0.507 MKDADVSRQIQQMIRFIRQEAEEKANEISVAAEEEFNIEKLQLLEAEKRKIRQEYERKAKQIDIRRKIEYSMQLNAARIKVLQAQDEAVNSMKDAAKKALLRVSNDKKLYKKLLKDMIVQGLLRLREPSVLLRCREGDRKLVESLLEEAKKEYTEKAKMQAPKIILDDRVYLPPPPKNGAVDSHEQFCSGGVVLASEDGKIVLENTLDARLDVIFRQKLPEACSFTHTPSIHFNILPWYCKWLFIVVTQLKRPWLADTRRRMEAVFITKPSSHFKIKLPPNPKLTFPSGHQSLPLRHKPTHFLTVSAALQNQQQQQAAPKDSSSEDESYGEVKKIIGSNALDGAAGMEYLIEWKDDHAPSWVPADFIAKDVIAEYETPWWTAAKKADESALKNLVDADDGRDIDAVDADGRTALLFVAGLGSEPCVRILAEAGANLDHRDNAGGLTALHMAAGYVRPGVAKLLLELGAEPEVEDDRGRTALDLAREILKATPKGNPMQFGRRVGLEGVIRVLEGAIFEYAEVEEILEERGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKKYEAGA. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03459 567 Hamap V-type proton ATPase subunit E [atpE]. 8 228 IPR002842 GO:0033178|GO:0046961|GO:1902600
Seca4g03459 567 Gene3D - 1 62 - -
Seca4g03459 567 Gene3D - 92 228 IPR038495 -
Seca4g03459 567 SMART chromo_7 328 380 IPR000953 -
Seca4g03459 567 SMART chromo_7 518 564 IPR000953 -
Seca4g03459 567 ProSiteProfiles Ankyrin repeat profile. 409 441 IPR002110 GO:0005515
Seca4g03459 567 Coils Coil 38 61 - -
Seca4g03459 567 Pfam ATP synthase (E/31 kDa) subunit 16 221 IPR002842 GO:0033178|GO:0046961|GO:1902600
Seca4g03459 567 SUPERFAMILY Ankyrin repeat 369 486 IPR036770 -
Seca4g03459 567 ProSiteProfiles Ankyrin repeat region circular profile. 409 441 - -
Seca4g03459 567 SUPERFAMILY Chromo domain-like 518 565 IPR016197 -
Seca4g03459 567 Gene3D - 374 515 IPR036770 -
Seca4g03459 567 CDD CD2_cpSRP43_like 518 565 - -
Seca4g03459 567 Gene3D - 516 566 - -
Seca4g03459 567 Gene3D - 325 373 - -
Seca4g03459 567 ProSiteProfiles Ankyrin repeat region circular profile. 443 475 - -
Seca4g03459 567 SMART ANK_2a 409 438 IPR002110 GO:0005515
Seca4g03459 567 SMART ANK_2a 443 472 IPR002110 GO:0005515
Seca4g03459 567 SMART ANK_2a 374 405 IPR002110 GO:0005515
Seca4g03459 567 Pfam Ankyrin repeats (many copies) 429 484 IPR002110 GO:0005515
Seca4g03459 567 ProSiteProfiles Ankyrin repeat profile. 443 475 IPR002110 GO:0005515
Seca4g03459 567 SUPERFAMILY V-type ATPase subunit E-like 87 222 - -
Seca4g03459 567 SUPERFAMILY Chromo domain-like 326 379 IPR016197 -
Seca4g03459 567 Coils Coil 14 34 - -
Seca4g03459 567 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 223 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03459 Seca-Chr4 60205411 60208521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03459 1 221 Primary Pumps ATPases(2) AT3G08560 71.493 3.24e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03459 K12271 - gmx:100818382 484.182