Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03458 ATGAAGTTCTGCAAAAAATACCAAGCGTACATGCAAGGCCAGGAGAAGAAGCTTCCAGGGGTTGGCTTCAAGAAACTCAAGAAGATCTTGAAGAAGTGCAGGAATGACCGTGAATACCACAAAGGCCTCAATAATCATAATCCATCCCTTGGCAACAGAACCTGTCCTGACCATTGCCCAGTGTGCGATGGGACATTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTATAGTAGGCTGCTTCAATCAGCATGCGAAGAAATTGCTTGAGCTACATCTCGCTTCTGGCTTCAGAAAGTACCTTTTATGGTTCAAAGGCAAATTACAAGGGAACCATACTGATCTAATTCAAGAAGGCAAAGATCTGGTCACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGCGAGCTTATGGCATTCCACATCAATTTAAGGGAAACTAATCACAAGTCAAGAAACGCATCTTCTTTGTTCGATGAATGTTCTCTTACATTTAAGGATGGAAAGCCATCTCTTACCTGTCACCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATTTGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATTTTCTGCTATGTTTGTGCCTGCTCAGCAGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAGATCCTAAACAGAAATGTCCTCTATGTCGAGAGGGTGCAGTTTATAAAGGTGTTGTGCACTTGGATGAACTAAATATTTTATTAGGCCGAAGCTGTCGTGAATATTGGGAGCAAAGGCTTCAGACAGAGAGGGTAGAGAGGATCAAGCAAATAAAGGAACACTGGGAATCACAGTGTAGGGCATTAACTGGCATCTAA 984 0.4126 MKFCKKYQAYMQGQEKKLPGVGFKKLKKILKKCRNDREYHKGLNNHNPSLGNRTCPDHCPVCDGTFFPSLLNEMSVIVGCFNQHAKKLLELHLASGFRKYLLWFKGKLQGNHTDLIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETNHKSRNASSLFDECSLTFKDGKPSLTCHLFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYVCACSAASVSIVDGLKAADPKQKCPLCREGAVYKGVVHLDELNILLGRSCREYWEQRLQTERVERIKQIKEHWESQCRALTGI. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03458 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 326 IPR033326 -
Seca4g03458 327 SMART ring_2 223 271 IPR001841 -
Seca4g03458 327 CDD RING-HC_BAH1-like 213 286 - -
Seca4g03458 327 ProSiteProfiles Zinc finger RING-type profile. 223 272 IPR001841 -
Seca4g03458 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 325 IPR013083 -
Seca4g03458 327 ProSiteProfiles SPX domain profile. 1 154 IPR004331 -
Seca4g03458 327 SUPERFAMILY RING/U-box 216 275 - -
Seca4g03458 327 CDD SPX_BAH1-like 2 150 - -
Seca4g03458 327 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
Seca4g03458 327 Pfam Zinc finger, C3HC4 type (RING finger) 220 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03458 Seca-Chr4 60192425 60195035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03458 220 272 C3H Transcription Factor Family AT4G28270 41.379 1.99e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03458 K16275 - gmx:100787904 580.482