Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03456 ATGGGAAACAAGAAAGAGATGAGAAGCTCTGCGTGTTATATGCTAGTATTGTGTCTTACCTTCATTTGGTTTCGCGTAACAGTGTGCTCTTCATTCAGTGATTTGGAAGCGCTGCTAAAGCTGAAGGATTCCATGAAGGGAAAGGAAGCCAAAGACGATGCACTGCAAGACTGGAAGTTTTCCGCGTCACTTTCGGCACACTGTTCATTTTCTGGGGTAACATGTGACCAAAACCTGCGTGTGATTGCTCTCAACGTGACAGGCGTTCCTCTCTTCGGGACCCTTCCGCGGGAGATTGGAATGCTTGACAAGCTGGAGAATCTCACCATCTCCATGGACAACCTCACCGGCACTCTCCCTATGGAGCTTTCCAACCTCACTTCTCTTAAGATCCTCAACGTCTCTCATAACGGCTTCTCCGGCAACTTTCCCGGCAACATCACCTTCCGCATGACCAAACTGGAGGTCCTCGACGCCTACGACAACAACTTCAACGGATCACTTCCGGAGGAAATTGTCAAACTCACGGAACTCAAGTACCTCCACCTCGGCGGGAACTATTTTTCCGGCACGATACCGGAGAGTTACACCGAGTTTCAGAGCTTGGAGTATTTGTGCTTGAACGCAAACAGCTTAACTGGCAAGATTCCCAAGAGCTTAGCCAAGTTGAAGATGTTGAAGGAACTGTTTCTCGGCTACACCAATGCTTTCGATGGAATTCCACCGGAGCTTGGTTCCATTGAATCTCTGCGACTGCTTGACTTGTCTAGCTCCGGCCTCAGCGGAGAGATTCCACCGAGCTTAGGCAATTTGACAAACCTTCATTCCTTGTTCTTGCAAATGAACAACCTCTCTGGAACACTTCCGCCGCAGCTATCTTCCATGATGAGTCTCATGTCGCTGGACCTCTCCTACAACAACCTCACCGGAGAGATTCCGGAGAGTTTCTCCCAGCTTAAAAACCTCACTCTCATGAACTTCTTCAAGAACAACTTCCGCGGCCCCATCCCCTCCTTCGTCGGAGACCTTCCCAATCTGGAAACGCTTCAGCTTTGGGAGAACAACTTCTCCTTCGTGCTGCCTCAGAATTTGGGTCAAAATGGGAAGTTCAAGTACTTCGACGTGACGAAAAACCATCTCACAGGATTGATCCCTCCGGATTTGTGCAAAGGAGGGAGGTTGCAAACGTTCATTATCACCGATAACTTCTTCGACGGTCCAATCCCAAACGGAATCGGCGAGTGCAAGTCACTCACCAAGATCCGAGTCGCCAATAACTACCTGGACGGGCCGGTTCCCCCGGGGATTTTCAAACTACCTTTAGTTACAATAATGGAACTGAATAATAACCGCTTTAACGGCCAACTGCCTTCCGTGATTTCCGGCGATTCTCTCGGTACGCTCACGCTTTCCAACAACTTATTCACCGGGAGAATTCCTCCTGAGTTGAAAAACCTCAGAGCGTTACAGGCTTTGTTGCTGAACGCCAATGAGTTCGTTGGCGAAATCCCAGGGGAAGTTTTTGAAATACCAAGGCTGACGAAGGTTAACATAAGCGGCAACAACCTCACCGGTCCAATCCCAACGACGATTACTCACTGCGTTTCACTGACTGCCGTTGACCTGAGCCGGAACATGCTGGACGGCGAGGTTCCGAAGGGGATGAAGCTCCTGAAAGACTTAAGCATTTTGAATCTGTCTCGTAACCATATATCTGGTCCAGTTCCCGACGAGATTCGATTCATGACGAGTCTCACCACTCTGGATCTCTCCAACAACAATTTCACCGGCAGTATCCCCACCGGGGGTCAGTTTTTGGTCTTCAACGACAAGTCGTTTTATGGGAACCCCAACCTCTGTTTCCCTCACCAGACCTCTTGCCCTTCCTTGCTCTACCTATCAACGAAAAGCCATAGCAAAACGGCGAGGGTGAAAGCCGTCGTGATCGGGATTGCACTCGCCACCGCGGTCTTGCTGGTGCTGGTGACGTTGCACGTGACGAGGAAGAGGAAGCTGCACAGATCAAAGGCGTGGAAGCTGACAACGTTTCAGAGGCTAGACTTCAAAGCGGAGGACGTGGTGGAGTGCCTGAAGGAAGAGAACATAATAGGGAAAGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAACGAAACGGACATAGCAATAAAGCGTTTGGTTGGGCAAGGAAGTGGGAGAAACGATTACGGGTTCAAAGCGGAGATAGAGACGCTGGGGAAGATAAGACACAGGAACATAATGAGGCTTCTGGGGTATGTTTCAAACAAGGACACTAACTTGTTGCTGTATGAGTACATGCCAAATGGGAGCTTAGGGGAATGGCTGCATGGGTCGAAGGGTGGGCACTTGAGGTGGGAGATGAGGTACAGGATTGCGGTGGAAGCAGCGAAGGGACTTTGCTATTTGCACCATGATTGTTCCCCTCTTATCATTCACAGGGATGTCAAGTCCAATAACATATTGCTAGATGCAGACTTTGAGGCCCATGTCGCCGATTTTGGACTTGCCAAGTTCTTGTACGACCCAGGAGCCTCTCAGTCTATGTCCTCCATCGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACGCTGAAAGTGGACGAGAAAAGTGATGTGTATAGCTTTGGCGTAGTGCTGTTGGAGCTGATCGTAGGAAGAAAGCCAGTGGGTGAGTTTGGAGATGGCGTGGACATTGTTGGATGGGTGAATCAAACGAGATTAGAACTCTCTCAGCCGTCGGATGCGGCATTGGTGTTAGCAGTGGTGGACCCACGCCTTACAGAGTATCCTTTGACAAGTGTCATCCACATGTTCAATATAGCTATGATGTGTGTTAAAGAAATGGGGCCCTCAAGGCCTACCATGAGGGAAGTTGTTCATATGCTCACCAATCCTCCTCCACAGTCTACCACTCATCACAACCTAATTAATCTCTAG 2967 0.4961 MGNKKEMRSSACYMLVLCLTFIWFRVTVCSSFSDLEALLKLKDSMKGKEAKDDALQDWKFSASLSAHCSFSGVTCDQNLRVIALNVTGVPLFGTLPREIGMLDKLENLTISMDNLTGTLPMELSNLTSLKILNVSHNGFSGNFPGNITFRMTKLEVLDAYDNNFNGSLPEEIVKLTELKYLHLGGNYFSGTIPESYTEFQSLEYLCLNANSLTGKIPKSLAKLKMLKELFLGYTNAFDGIPPELGSIESLRLLDLSSSGLSGEIPPSLGNLTNLHSLFLQMNNLSGTLPPQLSSMMSLMSLDLSYNNLTGEIPESFSQLKNLTLMNFFKNNFRGPIPSFVGDLPNLETLQLWENNFSFVLPQNLGQNGKFKYFDVTKNHLTGLIPPDLCKGGRLQTFIITDNFFDGPIPNGIGECKSLTKIRVANNYLDGPVPPGIFKLPLVTIMELNNNRFNGQLPSVISGDSLGTLTLSNNLFTGRIPPELKNLRALQALLLNANEFVGEIPGEVFEIPRLTKVNISGNNLTGPIPTTITHCVSLTAVDLSRNMLDGEVPKGMKLLKDLSILNLSRNHISGPVPDEIRFMTSLTTLDLSNNNFTGSIPTGGQFLVFNDKSFYGNPNLCFPHQTSCPSLLYLSTKSHSKTARVKAVVIGIALATAVLLVLVTLHVTRKRKLHRSKAWKLTTFQRLDFKAEDVVECLKEENIIGKGGAGIVYRGSMPNETDIAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGSKGGHLRWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNQTRLELSQPSDAALVLAVVDPRLTEYPLTSVIHMFNIAMMCVKEMGPSRPTMREVVHMLTNPPPQSTTHHNLINL. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03456 988 Pfam Protein tyrosine and serine/threonine kinase 698 972 IPR001245 GO:0004672|GO:0006468
Seca4g03456 988 Pfam Leucine rich repeat 511 571 IPR001611 GO:0005515
Seca4g03456 988 Pfam Leucine rich repeat 177 234 IPR001611 GO:0005515
Seca4g03456 988 FunFam Leucine-rich repeat receptor-like protein kinase 32 194 - -
Seca4g03456 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 987 - -
Seca4g03456 988 SMART serkin_6 697 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03456 988 Gene3D Ribonuclease Inhibitor 290 360 IPR032675 -
Seca4g03456 988 Gene3D Transferase(Phosphotransferase) domain 1 774 984 - -
Seca4g03456 988 SMART LRR_typ_2 486 510 IPR003591 -
Seca4g03456 988 SMART LRR_typ_2 343 367 IPR003591 -
Seca4g03456 988 SMART LRR_typ_2 271 295 IPR003591 -
Seca4g03456 988 SMART LRR_typ_2 582 605 IPR003591 -
Seca4g03456 988 SMART LRR_typ_2 151 175 IPR003591 -
Seca4g03456 988 SUPERFAMILY L domain-like 336 638 - -
Seca4g03456 988 Gene3D Phosphorylase Kinase; domain 1 662 773 - -
Seca4g03456 988 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 630 - -
Seca4g03456 988 Gene3D Ribonuclease Inhibitor 32 194 IPR032675 -
Seca4g03456 988 Gene3D Ribonuclease Inhibitor 195 289 IPR032675 -
Seca4g03456 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 202 973 - -
Seca4g03456 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 666 773 - -
Seca4g03456 988 Pfam Leucine Rich repeat 583 597 IPR001611 GO:0005515
Seca4g03456 988 SUPERFAMILY RNI-like 84 429 - -
Seca4g03456 988 Pfam Leucine Rich Repeat 298 319 IPR001611 GO:0005515
Seca4g03456 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Seca4g03456 988 ProSiteProfiles Protein kinase domain profile. 697 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03456 988 FunFam Leucine-rich receptor-like protein kinase family protein 240 337 - -
Seca4g03456 988 SUPERFAMILY Protein kinase-like (PK-like) 689 972 IPR011009 -
Seca4g03456 988 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Seca4g03456 988 Gene3D Ribonuclease Inhibitor 361 630 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03456 Seca-Chr4 60121005 60124434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03456 29 976 Receptor kinase-like Gene Family AT1G75820 62.749 0.0 1231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g03456 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03456 K00924 - gmx:732625 1504.19