Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03453 ATGACAATAACTAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAGTAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTGATCTGAAAATGACACTTCATGGGCTGGGGTATATGGCTCCAGAGTATCTAGCTCATGGTCAATTAACAGAAAAGGCAGACGTATATAGTCTTGGAGTGTTACTACTAGAGATAGTTACTGGTAGACAGAACAATAGGAGCAAAGCATCAGAGTATTCAGACAGCTTAGTTACAGTGGTCAGTTGCATATTCCTTGATTGTTTTGTTCTGATTGTTGCTCAACTGTACACCAATCATGGGACTGCCAAACAATTATTTGATCCAAATCTACAGTTGCATGATGACCACAATAGCGACGTTAAGAATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTACATTACGACCAACCATGTCAAAGACACTACAGATGCTAACAAAGGAGGAGGAGGATCTTGTTGCTTCCTCTAATTCACCATTCCTAGATGAGAATACCATGAAACTCCATGACATGAGCAGTGACCCATTTTACCCTCTCAATGCAGCTGATTTAATCGCTACTATGTCCCATAGGCCATAG 690 0.4014 MTITNKLGQGGFGTVYKGVLADGREIAIKRLYFNSRHRAADFYNEVNIISDLKMTLHGLGYMAPEYLAHGQLTEKADVYSLGVLLLEIVTGRQNNRSKASEYSDSLVTVVSCIFLDCFVLIVAQLYTNHGTAKQLFDPNLQLHDDHNSDVKNEILRVVHIGLLCTQEVPTLRPTMSKTLQMLTKEEEDLVASSNSPFLDENTMKLHDMSSDPFYPLNAADLIATMSHRP. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03453 229 ProSitePatterns Protein kinases ATP-binding region signature. 7 29 IPR017441 GO:0005524
Seca4g03453 229 SUPERFAMILY Protein kinase-like (PK-like) 3 181 IPR011009 -
Seca4g03453 229 SMART serkin_6 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03453 229 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03453 229 Pfam Protein tyrosine and serine/threonine kinase 59 102 IPR001245 GO:0004672|GO:0006468
Seca4g03453 229 Gene3D Phosphorylase Kinase; domain 1 2 54 - -
Seca4g03453 229 Gene3D Transferase(Phosphotransferase) domain 1 55 196 - -
Seca4g03453 229 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 4 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03453 Seca-Chr4 60081294 60082673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03453 4 67 Receptor kinase-like Gene Family AT1G70520 64.706 4.72e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g03453 PK_Tyr_Ser-Thr 1.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03453 - - gmx:100305420 239.58