Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03443 ATGGACTCGCGACGCGCCTCGCGGGCCATCATCGACCCCAAATTAAGGCGCGTCGGATTCTTTGCTGCGCGGGCAGAACCCGACCCGCCCGACCCCGACCCCGACCCCGACCCCCTGCCGCTATCGGAGTCTCCCTCCTCCATCACGATACCGCCGCCACGTCATCTTTCCGAGCGGACCGCCGCCGTACCCGTCCCAGAGACTGGGCTCCGGCGCCAGGTTTCTGGCGACCGGCTGCCTATCGGGAGCTACAACCCTTCCGAGTCGCTGCTCGGAACCTCGCCGGCAGCGTCGCATTCTTCTAGCGGTGCCGGAATCGGCGACGGAGAGTTCTCTGAGGACTGTTCTGGCGCCGGCTGGTTCCGTGGCAGCGAATTGAGTTTCCGCGGCGCAGGGTTCGATTTGCCGGCCGTGAAGCCTCCGGAAAATTCGACGGAGAACAGCTTCGCTGTGGCGGTGAATGTGAAAAATATTCCTGGAGGCACTGAAAAGAGGGAAGAGGATGTCAAAAAAGTACACCCTGATCTTCCATCAATTTCAAAGCCACTGAAAGAAAAAACTACAAAGGCTGAGAGACGAGCCTTGCAGGAGGCACAAAGAGCTGCAAAAGCTGCTTCTAAAGCTGGAGGAAGTACAGCAGTCACTGAATCTGGCAAAGCAGCCCCAGTTAAAAGTATGAAGCAAACTTCACAAAAGAAAGATGGTACTCCTGTTACATCATCAGTGGCTACTGATAAGAAATCTGGAGATCGTACTTTGGAGAAAGAGAGGAAAAAAGATGTTCCTCCTCCGCGAATGCAATTTGATGACAAAAACAAGGTGGAAAAGGTTGGATTGCGTTATTTGGCTGGAGACATATCAGGGGCTAATGCTCGTTGTATTGAAATGCTTAGAGCATTTCAGGAAGCCATTACAGACTACTCCACACCACCTGAAAAAGTCCTTGTTAGGGATTTAACTGCAAAAATCAGTAGTTATGTTTCATTTTTTACTGAATGCAGACCACTTTCTATTAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGCCAAGTTGCCTTTAAGTCATACTGAATCTGAGGCAAAAGCAGCTCTTTATTCTGATATTGACCAATTCATTAATGAAAAAATAATTCTTGCTGATAAGGTGATTGTTGGACATGCTGCTACAAAGGTTAGGGATGGAGATGTTCTTCTTACATATGGATCATCTTGTATTGTTGAGATGATTCTTTCACATGCCCATGATCTTGGGAAACAGTTCCGAGTTGTGGTGGTAGGCTCACGATCAAAGCTTGAAAGTCAGGCCTTACTTCGTAGGCTGGTTGCCAAGGGCCTGAGTTGTACATATACTCATATAAATGCCATTTCTTATATCATGCATGAGGTCACACGAGTTTTTCTTGGAGCTTCTGCCGTTCTGTGTAATGGAACTGTATATTCAAGGGTTGGGACTGCATGTGTTGCAATGGTGGCACATGCATTCCGCGTTCCTGTATTAATCTGTTGTGAAGCTTATAAGTTTCATGAAAGGGTGCAACTTGATTCAATATGTTCCAATGAACTAGGTGACCCAGATGCTGTTGCCATGGTTCCTGGAAGAACGGATGTCAATTATCTGCACAATTGGACTAATGAAGGCAATTTGCAGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTCTCGGCGATTATTACAGATCATGGAATGATCCCTCCTACAAGTGTGCCCGTAATTGTACGCGAGTATGGGCGAGAGCACTTGATATAG 1785 0.4751 MDSRRASRAIIDPKLRRVGFFAARAEPDPPDPDPDPDPLPLSESPSSITIPPPRHLSERTAAVPVPETGLRRQVSGDRLPIGSYNPSESLLGTSPAASHSSSGAGIGDGEFSEDCSGAGWFRGSELSFRGAGFDLPAVKPPENSTENSFAVAVNVKNIPGGTEKREEDVKKVHPDLPSISKPLKEKTTKAERRALQEAQRAAKAASKAGGSTAVTESGKAAPVKSMKQTSQKKDGTPVTSSVATDKKSGDRTLEKERKKDVPPPRMQFDDKNKVEKVGLRYLAGDISGANARCIEMLRAFQEAITDYSTPPEKVLVRDLTAKISSYVSFFTECRPLSISMGNAIRFVKSRIAKLPLSHTESEAKAALYSDIDQFINEKIILADKVIVGHAATKVRDGDVLLTYGSSCIVEMILSHAHDLGKQFRVVVVGSRSKLESQALLRRLVAKGLSCTYTHINAISYIMHEVTRVFLGASAVLCNGTVYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGDPDAVAMVPGRTDVNYLHNWTNEGNLQLLNLMYDATPSDYVSAIITDHGMIPPTSVPVIVREYGREHLI. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03443 594 SUPERFAMILY NagB/RpiA/CoA transferase-like 262 588 IPR037171 -
Seca4g03443 594 Pfam Initiation factor 2 subunit family 286 578 IPR000649 GO:0044237
Seca4g03443 594 MobiDBLite consensus disorder prediction 247 269 - -
Seca4g03443 594 MobiDBLite consensus disorder prediction 18 116 - -
Seca4g03443 594 MobiDBLite consensus disorder prediction 80 101 - -
Seca4g03443 594 Gene3D - 382 588 IPR042529 -
Seca4g03443 594 MobiDBLite consensus disorder prediction 222 246 - -
Seca4g03443 594 MobiDBLite consensus disorder prediction 160 198 - -
Seca4g03443 594 MobiDBLite consensus disorder prediction 157 269 - -
Seca4g03443 594 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 44 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03443 Seca-Chr4 59975033 59980650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03443 1 594 Eukaryotic Initiation Factors Gene Family AT5G38640 53.314 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03443 K03680 - gmx:100778711 833.943