Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03440 ATGGCCGAAGAAGAACACGACCATCACACCTCGCCTGAGTACGAGGACCAAGCTAAGAAGAAGAAGAAGCTGCGCAAGAGGAAAAGATCTCGTAAGACCGAACAAGAAGAGGAGAATGGGGTTGCAGAATCTGCGGAGGACAACAACAAGGATGAGAATGGGCAACCACATACTGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGGGAAGAGAAAAAGGTGGACAACGCTGCGTCTGGAATTATGAGTGCTCAACCTTTTTCGTCTCTGGGATTGTCTGAACCTACTTCTAAGGCTATTATGGATATGAGTTTCCACCATATGACTCAGATTCAAGCGAGAGCAATTCCGCCTCTTCTGATGGGAAAGGACGTTCTTGGTGCTGCGAGGACAGGTGCTGGAAAAACTCTTGCCTTTTTAATTCCAGCCGTAGAATTGTTGTACAACATTCAGTTTACACCTCGTAATGGAACTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGTAGAAGGGGAGAAGCAGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTAGCAACTCCTGGTCGCCTCCTCGATCACCTTCAGAATACTAACGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAGGCAGACAGGATATTGGAAGCAAACTTCGAGGAGGAAATGAAGCAGATCATCAATATACTTCCAAAGAAAAGGCAAACGGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCCCGTTTGTCATTTCAAACAACTCCCATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTTCATGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCGTGCAACTCTGTCAGATTCCATGCAGATCTTCTCAAGTGTACTGGGTTAGACTGCTTAAATATTCATGGAAAACAGAAGCAGCATGCCAGGACAACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCAGCTCGTGGGCTCGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAAGGAAATGCTTTACTTTTCTTGATTCCTGAAGAATTGAAATTTCTTCGCTATTTGAAGGCAGCGAAAGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCTTTCTGTTTTTCAAATCCACCAAAGATAAATCTAAACATAGACAGCAGTGCTTCAAAGCACAGGAAGAAAATACGCAAGGTGGAAGGAGGAAGGCATTGA 1707 0.42 MAEEEHDHHTSPEYEDQAKKKKKLRKRKRSRKTEQEEENGVAESAEDNNKDENGQPHTEGEEEEEEEEEEEEEEEEEEEEEEEEEGGEEKKVDNAASGIMSAQPFSSLGLSEPTSKAIMDMSFHHMTQIQARAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNIQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRRGEAERIVKGVNLLVATPGRLLDHLQNTNGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVRFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLRYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKINLNIDSSASKHRKKIRKVEGGRH. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03440 568 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Seca4g03440 568 FunFam RNA helicase 320 550 - -
Seca4g03440 568 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g03440 568 Pfam Domain of unknown function (DUF4217) 485 545 IPR025313 -
Seca4g03440 568 MobiDBLite consensus disorder prediction 30 57 - -
Seca4g03440 568 Pfam Helicase conserved C-terminal domain 339 443 IPR001650 -
Seca4g03440 568 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 309 IPR014001 -
Seca4g03440 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 465 IPR027417 -
Seca4g03440 568 PANTHER RNA HELICASE 45 484 - -
Seca4g03440 568 CDD DEADc_DDX18 114 311 IPR044773 GO:0003724|GO:0005524
Seca4g03440 568 SMART DUF4217_3 484 547 IPR025313 -
Seca4g03440 568 MobiDBLite consensus disorder prediction 1 95 - -
Seca4g03440 568 SMART helicmild6 363 444 IPR001650 -
Seca4g03440 568 Gene3D - 320 563 IPR027417 -
Seca4g03440 568 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
Seca4g03440 568 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 493 IPR001650 -
Seca4g03440 568 SMART ultradead3 122 327 IPR014001 -
Seca4g03440 568 MobiDBLite consensus disorder prediction 58 88 - -
Seca4g03440 568 Coils Coil 57 91 - -
Seca4g03440 568 Coils Coil 18 38 - -
Seca4g03440 568 Gene3D - 47 313 IPR027417 -
Seca4g03440 568 Pfam DEAD/DEAH box helicase 127 298 IPR011545 GO:0003676|GO:0005524
Seca4g03440 568 CDD SF2_C_DEAD 324 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03440 Seca-Chr4 59957569 59964748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03440 103 462 Eukaryotic Initiation Factors Gene Family AT3G13920 31.233 1.35e-44 161