Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03434 ATGGAGCCCATGGACATCGTTGCAAAAACAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGATGTGCGTGTCGCAAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCATCAGAGTCCAATGAAGTCTGTAACAGAGAGGAAAGAAGGACGATTGCTCCTGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAAGAAGTTTATGCAGCATATGAACAGCACAAGCTGGAGACAATGATTACTATTGTTTATCGACTGGCTTCAGCAAAGAAAAACTATTTTCTGAGTTATTTTGTTACCTTACAGCACGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCCGAGATGACTGAGGAAGAAGCATTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGAATGAATGGAGGGGCCATTACTTCCAAACAGCCAGATGCTGATAATAAAAAAGAAGAAACTAGATTCTCTCTCTGTCTCTCTGTCTTTCCCATCTATTCTTTAAGCAGCAGCCAACCCTTTGATTTTCTTTCTCAGATGAATACAGTCATGGCTAAAAGCTCTCAAGACGTGTCCTCTAAGAGGCACTTTCATTGGACAAACAAGGTTGGATCTGAAGATGTTGAAGTTCCCACTTCAGAATCATTCTCAACACTCATCCAGGATGAGAAAAAAGAGGATGATAAGGTTGTTGCTCCTGAGGCTTCAGTTCCTGCAGCCACTTCACAGGCAACAAGGAGGAAGCTGAGAGCAGTGGCAATCTCCAGGCTTCGCTCTGTTCTCACTGTGTTTGGCAAGAACCGTTTCAACACAGCTTTTGGCCTTGGTTCTCGTGTAGTTGGCACCCTCTTTGGATATAGACGTGGGCATGTACATTTTGCATTTCAAAAGGACCCCACTTCCCAGCCAGCCTTTCTGATTGAGCTTGCAACACCAATCAGTGGTTTGGTTCGTGAAATGGCATCTGGGTTGGTTAGAATTGCTCTGGAATGTGATAAGGAGAAAGAAGCTGAGAAGAAAGCTGTGAGATTGCTGGAAGAGCCTCTGTGGAGAACATATTGCAATGGCAAGAAGAGTGGTTTTGCTACCAGAAGAGAATGTGGGCCAAAGGATTGGGATATCCTCAAAGCCGTGGAGCCAATTTCAATGGGTGCAGGCGTTTTACCAGGAAATAATAATGAAGCTGAAACAGGGTCAGAGGGTGAAGTCATGTACATGAGGGCTAAGTTTGAGAGAATTGTTGGGTCAAGAGACTCTGAAGCTTTCTACATGATGAATCCTGACAGCAATGGTGCTCCTGAGCTCAGCATTTATCTGCTTAGAGTCTAG 1407 0.4442 MEPMDIVAKTKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMITIVYRLASAKKNYFLSYFVTLQHDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADNKKEETRFSLCLSVFPIYSLSSSQPFDFLSQMNTVMAKSSQDVSSKRHFHWTNKVGSEDVEVPTSESFSTLIQDEKKEDDKVVAPEASVPAATSQATRRKLRAVAISRLRSVLTVFGKNRFNTAFGLGSRVVGTLFGYRRGHVHFAFQKDPTSQPAFLIELATPISGLVREMASGLVRIALECDKEKEAEKKAVRLLEEPLWRTYCNGKKSGFATRRECGPKDWDILKAVEPISMGAGVLPGNNNEAETGSEGEVMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSIYLLRV. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03434 468 Pfam Protein of unknown function, DUF617 305 467 IPR006460 GO:0010274
Seca4g03434 468 NCBIfam uncharacterized plant-specific domain TIGR01570 305 468 IPR006460 GO:0010274
Seca4g03434 468 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Seca4g03434 468 Gene3D Histone, subunit A 4 166 IPR009072 GO:0046982
Seca4g03434 468 PANTHER PROTEIN MIZU-KUSSEI 1 247 468 IPR006460 GO:0010274
Seca4g03434 468 Coils Coil 138 158 - -
Seca4g03434 468 SUPERFAMILY Histone-fold 12 166 IPR009072 GO:0046982
Seca4g03434 468 FunFam Negative cofactor 2 beta 6 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03434 Seca-Chr4 59905067 59912193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03434 1 172 CCAAT-DR1 Transcription Factor Family AT5G23090 71.512 1.36e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca4g03434 DUF617 7.5e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03434 - - gmx:100814991 421.009