Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03433 ATGGCTGGTGGTAGAGGTAGAAGGAAGAAGCACCACTTCAGCAGAATCCATGCATTTTCTTGTGGGAAAGCTTCATTCAGAGGTGAGCATTCACTTATAGGAGGCCCTGGCTTCTCAAGGATAGTCTACTGCAACGAACCAGAACATGGTGGGGCTAGTCTTCTGAATTATGGTGATAATTATGTCAGAACTACCAAATATTCACTTGCCACTTTCCTACCCAAGTCATTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTCCTTGTCTGTGCAATCTTGTCTTTCCTCCCGCTCTCTCCTTACTCAGCTGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAGGCGGAGAAAGCAGGATATTGAGGTGAATAACAGAAAGGTTAAAGTGCATTGTGGAAATGGTGTTTTTTACTATACTAAATGGAAGGATTTGAAAGTTGGAGACCTAGTAAAGGTTGAAAAAGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTGAAAATGAAGCAAGCACTGGAAGAAACTTCCAAGTTGCAAGAAGACTCTAGCTTTCAAAATTTCAAGGCTATCATCAACTGTGAAGATCCAAATGCAAATTTATACTCTTTCATAGGCAATCTGGAGCTTGAAGATCAACTGTATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGACTCAAAGCTGAGGAACACAAATTTTATATATGGAGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAATTGTACAGACCCTCCATCCAAGAGAAGCAAAGTTGAGAGACGGATGGATAAGATCATCTACTTTCTGTTCTTTGTATTATTTTTCATTTCTTTTATTGGTTCCATTTTCTTCGGGATTGCAACAAGAGAGGACCTTGAAAATGGAGTAATGAAGAGATGGTACCTCAGACCAGATGATACTACAATTTACTTTGATCCAAAGGAAGCACCAGTTGCAGCAATTCTGCAGTTCTTGACCACACTTATGTTGTATAGTGACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGACGTGCACATGTATTATGATGAAACTGACCAGCCAGCACGTGCTCGCACCTCAAATCTGAATGAAGAACTTGGCCAAGTTGAAACAATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGATTGCCTATGGACGAGGAGTTACAGAAGTTGAGAGAGCCCTAGCCAGAAGAAAAGGATTACAAGATAGCAATGTTGCAGAGTTTTCTGAAACAAAGCCATCCATTAAAGGTTTTAACTTTGTGGATGAAAGGATCATGAACGGAAATTGGGTCAAAGAGCCTCATGCCAATGTAATCCAGAACTTCCTGCGGTTGTTGGCAGTCTGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGCAAAGTTTCATATGAAGCCGAGTCACCTGACGAGGCAGCTTTTGTAATTGCAGCCAGAGAACTTGGGTTTGAGTTTTATGAAAGGACACAGACAACCATTTCAGTGCGTGAATTCAATTCCATATCAGGCAAGACAATTGGAAGGTCTGGATTTTATTCTTGTATATGTAAGATTGATTTTCTATATGTTGACATTTATCTGCAATCCTACAAACTTTTGAACATATTGGAGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGATGGGAAACTACTACTACTTAGCAAAGGTGCAGACAGTGTCATGTTTGAACGACTTGCAAAGAATGGAAGGGAATTTGAAGAGAAGACTAAGCAGCACATCAATGAATATGCTAATGCTGGTTTGAGGACCTTGATACTTGCATACCGTGAACTTGATGAGGAAGAGTACAATATATTTAATAAAGAATTCATGGAAACCAAGAACATAGTGAGTGCAGATCGGGATCATATTGTAGAGGAAATATCAGAAAAGCTTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGGATTAAGCTATGGGTTTTGACTGGTGATAAAATGGAAACAGCAATCAATATTGGGTTTGCTTGCAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGAAACTCCAGAAACCAAATCACTAGAGAAAATGGAGAACAAGTCTGCTGCTGCAGCAGCAATTAAGGCAAGTGTTCTTCATCAATTAAGGGAAGGAATCGCACTACTTGCTGCATTTGATGAAAACTCTGAGGCATTAGCTCTGATCATTGATGGGAAGGCTCTCACTTATGCGCTAGAAGATGATGTAAAGGACTTGTTTCTTGCACTTGCCGTTGGTTGTGCTTCTGTTATGTGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACAGGTAGTACTACTCTAGCAATTGGCGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATCAGCGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCCCAATTCCGGTTTCTAGAGCGTTTACTTCTTATGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTTGGCTTCACTCTGTTCTTCTATGATATCTATGCCTCCTTCTCGGGGCAAGATGCATACAATGATTGGTTCCTGTCATTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTAATAGATTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTTCTATTTAGCTGGAAACGGATCCTTGGTTGGGCATTCAATGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAAGGCATTTGACAATCAAGCATTCCGCGAAGGAGGGGAAGTTGCTGGGCTGGAATTTCTTGGTGCTACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGTGGCATTATTTTTTGGTATATATTCCTACTAGCATATGGAGCCATGGACCCCTTGCTATCAACCACTGCCTATAAGGTCTTCATTGAAGCTTGTGCACCAGCACTATCTTACTGGCTCATTACTCTACTTGTGCTTGTTGCTTCACTCCTTCCATATTTTACCTATGCTTCAATCCAAATGAGATTCGTCCCTATGTTCCATCAAATGATACAGTGGATAAGAAATGATGGGCAAGCAACTGATCCAGAATACGTTGATGTTGTGCAACAGAGATCAATAAGACACACAACAGTTGGGTTCACAGCTCGTTTTGAAGCATCCAAAGACCGTTTGAAGTCTGAAAACCATTAA 3624 0.4018 MAGGRGRRKKHHFSRIHAFSCGKASFRGEHSLIGGPGFSRIVYCNEPEHGGASLLNYGDNYVRTTKYSLATFLPKSLFEQFRRVANFYFLVCAILSFLPLSPYSAVSNVVPLVVVVAATMGKEAVEDWRRRKQDIEVNNRKVKVHCGNGVFYYTKWKDLKVGDLVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKMKQALEETSKLQEDSSFQNFKAIINCEDPNANLYSFIGNLELEDQLYPLAPQQLLLRDSKLRNTNFIYGVVIFTGHDTKVMQNCTDPPSKRSKVERRMDKIIYFLFFVLFFISFIGSIFFGIATREDLENGVMKRWYLRPDDTTIYFDPKEAPVAAILQFLTTLMLYSDLIPISLYVSIEIVKVLQSIFINQDVHMYYDETDQPARARTSNLNEELGQVETILSDKTGTLTCNSMEFIKCSIAGIAYGRGVTEVERALARRKGLQDSNVAEFSETKPSIKGFNFVDERIMNGNWVKEPHANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTQTTISVREFNSISGKTIGRSGFYSCICKIDFLYVDIYLQSYKLLNILEFSSARKRMSVIVRDEDGKLLLLSKGADSVMFERLAKNGREFEEKTKQHINEYANAGLRTLILAYRELDEEEYNIFNKEFMETKNIVSADRDHIVEEISEKLEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPETKSLEKMENKSAAAAAIKASVLHQLREGIALLAAFDENSEALALIIDGKALTYALEDDVKDLFLALAVGCASVMCCRSSPKQKALVTRLVKIKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLMHGHWCYRRISSMICYFFYKNIAFGFTLFFYDIYASFSGQDAYNDWFLSLYNVFFTSLPVIALGVFDQDVSNRLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCIKAFDNQAFREGGEVAGLEFLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGGIIFWYIFLLAYGAMDPLLSTTAYKVFIEACAPALSYWLITLLVLVASLLPYFTYASIQMRFVPMFHQMIQWIRNDGQATDPEYVDVVQQRSIRHTTVGFTARFEASKDRLKSENH. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03433 1207 FunFam Phospholipid-transporting ATPase 713 917 - -
Seca4g03433 1207 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 714 IPR023299 GO:0000166
Seca4g03433 1207 FunFam Phospholipid-transporting ATPase 118 288 - -
Seca4g03433 1207 PRINTS P-type cation-transporting ATPase superfamily signature 877 896 - -
Seca4g03433 1207 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Seca4g03433 1207 SUPERFAMILY HAD-like 421 932 IPR036412 -
Seca4g03433 1207 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1154 IPR023298 -
Seca4g03433 1207 Gene3D - 109 288 - -
Seca4g03433 1207 NCBIfam phospholipid-translocating P-type ATPase 57 1162 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g03433 1207 SFLD Haloacid Dehalogenase 410 928 - -
Seca4g03433 1207 SUPERFAMILY Calcium ATPase, transduction domain A 145 286 IPR008250 -
Seca4g03433 1207 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1155 IPR032630 -
Seca4g03433 1207 NCBIfam HAD-IC family P-type ATPase 841 958 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g03433 1207 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1166 - -
Seca4g03433 1207 CDD P-type_ATPase_APLT_Dnf-like 59 1037 - -
Seca4g03433 1207 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Seca4g03433 1207 Gene3D - 714 917 IPR023214 -
Seca4g03433 1207 Gene3D - 589 713 IPR023299 GO:0000166
Seca4g03433 1207 Pfam Cation transport ATPase (P-type) 516 639 - -
Seca4g03433 1207 FunFam Phospholipid-transporting ATPase 535 713 - -
Seca4g03433 1207 SFLD p-type atpase 410 928 IPR044492 -
Seca4g03433 1207 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03433 Seca-Chr4 59889659 59896956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03433 1 1203 Primary Pumps ATPases AT1G68710 68.921 0.0 1778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03433 K01530 - gmx:100797039 1998.79