LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g03433	ATGGCTGGTGGTAGAGGTAGAAGGAAGAAGCACCACTTCAGCAGAATCCATGCATTTTCTTGTGGGAAAGCTTCATTCAGAGGTGAGCATTCACTTATAGGAGGCCCTGGCTTCTCAAGGATAGTCTACTGCAACGAACCAGAACATGGTGGGGCTAGTCTTCTGAATTATGGTGATAATTATGTCAGAACTACCAAATATTCACTTGCCACTTTCCTACCCAAGTCATTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTCCTTGTCTGTGCAATCTTGTCTTTCCTCCCGCTCTCTCCTTACTCAGCTGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAGGCGGAGAAAGCAGGATATTGAGGTGAATAACAGAAAGGTTAAAGTGCATTGTGGAAATGGTGTTTTTTACTATACTAAATGGAAGGATTTGAAAGTTGGAGACCTAGTAAAGGTTGAAAAAGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTGAAAATGAAGCAAGCACTGGAAGAAACTTCCAAGTTGCAAGAAGACTCTAGCTTTCAAAATTTCAAGGCTATCATCAACTGTGAAGATCCAAATGCAAATTTATACTCTTTCATAGGCAATCTGGAGCTTGAAGATCAACTGTATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGACTCAAAGCTGAGGAACACAAATTTTATATATGGAGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAATTGTACAGACCCTCCATCCAAGAGAAGCAAAGTTGAGAGACGGATGGATAAGATCATCTACTTTCTGTTCTTTGTATTATTTTTCATTTCTTTTATTGGTTCCATTTTCTTCGGGATTGCAACAAGAGAGGACCTTGAAAATGGAGTAATGAAGAGATGGTACCTCAGACCAGATGATACTACAATTTACTTTGATCCAAAGGAAGCACCAGTTGCAGCAATTCTGCAGTTCTTGACCACACTTATGTTGTATAGTGACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGACGTGCACATGTATTATGATGAAACTGACCAGCCAGCACGTGCTCGCACCTCAAATCTGAATGAAGAACTTGGCCAAGTTGAAACAATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGATTGCCTATGGACGAGGAGTTACAGAAGTTGAGAGAGCCCTAGCCAGAAGAAAAGGATTACAAGATAGCAATGTTGCAGAGTTTTCTGAAACAAAGCCATCCATTAAAGGTTTTAACTTTGTGGATGAAAGGATCATGAACGGAAATTGGGTCAAAGAGCCTCATGCCAATGTAATCCAGAACTTCCTGCGGTTGTTGGCAGTCTGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGCAAAGTTTCATATGAAGCCGAGTCACCTGACGAGGCAGCTTTTGTAATTGCAGCCAGAGAACTTGGGTTTGAGTTTTATGAAAGGACACAGACAACCATTTCAGTGCGTGAATTCAATTCCATATCAGGCAAGACAATTGGAAGGTCTGGATTTTATTCTTGTATATGTAAGATTGATTTTCTATATGTTGACATTTATCTGCAATCCTACAAACTTTTGAACATATTGGAGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGATGGGAAACTACTACTACTTAGCAAAGGTGCAGACAGTGTCATGTTTGAACGACTTGCAAAGAATGGAAGGGAATTTGAAGAGAAGACTAAGCAGCACATCAATGAATATGCTAATGCTGGTTTGAGGACCTTGATACTTGCATACCGTGAACTTGATGAGGAAGAGTACAATATATTTAATAAAGAATTCATGGAAACCAAGAACATAGTGAGTGCAGATCGGGATCATATTGTAGAGGAAATATCAGAAAAGCTTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGGATTAAGCTATGGGTTTTGACTGGTGATAAAATGGAAACAGCAATCAATATTGGGTTTGCTTGCAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGAAACTCCAGAAACCAAATCACTAGAGAAAATGGAGAACAAGTCTGCTGCTGCAGCAGCAATTAAGGCAAGTGTTCTTCATCAATTAAGGGAAGGAATCGCACTACTTGCTGCATTTGATGAAAACTCTGAGGCATTAGCTCTGATCATTGATGGGAAGGCTCTCACTTATGCGCTAGAAGATGATGTAAAGGACTTGTTTCTTGCACTTGCCGTTGGTTGTGCTTCTGTTATGTGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACAGGTAGTACTACTCTAGCAATTGGCGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATCAGCGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCCCAATTCCGGTTTCTAGAGCGTTTACTTCTTATGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTTGGCTTCACTCTGTTCTTCTATGATATCTATGCCTCCTTCTCGGGGCAAGATGCATACAATGATTGGTTCCTGTCATTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTAATAGATTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTTCTATTTAGCTGGAAACGGATCCTTGGTTGGGCATTCAATGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAAGGCATTTGACAATCAAGCATTCCGCGAAGGAGGGGAAGTTGCTGGGCTGGAATTTCTTGGTGCTACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGTGGCATTATTTTTTGGTATATATTCCTACTAGCATATGGAGCCATGGACCCCTTGCTATCAACCACTGCCTATAAGGTCTTCATTGAAGCTTGTGCACCAGCACTATCTTACTGGCTCATTACTCTACTTGTGCTTGTTGCTTCACTCCTTCCATATTTTACCTATGCTTCAATCCAAATGAGATTCGTCCCTATGTTCCATCAAATGATACAGTGGATAAGAAATGATGGGCAAGCAACTGATCCAGAATACGTTGATGTTGTGCAACAGAGATCAATAAGACACACAACAGTTGGGTTCACAGCTCGTTTTGAAGCATCCAAAGACCGTTTGAAGTCTGAAAACCATTAA	3624	0.4018	MAGGRGRRKKHHFSRIHAFSCGKASFRGEHSLIGGPGFSRIVYCNEPEHGGASLLNYGDNYVRTTKYSLATFLPKSLFEQFRRVANFYFLVCAILSFLPLSPYSAVSNVVPLVVVVAATMGKEAVEDWRRRKQDIEVNNRKVKVHCGNGVFYYTKWKDLKVGDLVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKMKQALEETSKLQEDSSFQNFKAIINCEDPNANLYSFIGNLELEDQLYPLAPQQLLLRDSKLRNTNFIYGVVIFTGHDTKVMQNCTDPPSKRSKVERRMDKIIYFLFFVLFFISFIGSIFFGIATREDLENGVMKRWYLRPDDTTIYFDPKEAPVAAILQFLTTLMLYSDLIPISLYVSIEIVKVLQSIFINQDVHMYYDETDQPARARTSNLNEELGQVETILSDKTGTLTCNSMEFIKCSIAGIAYGRGVTEVERALARRKGLQDSNVAEFSETKPSIKGFNFVDERIMNGNWVKEPHANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTQTTISVREFNSISGKTIGRSGFYSCICKIDFLYVDIYLQSYKLLNILEFSSARKRMSVIVRDEDGKLLLLSKGADSVMFERLAKNGREFEEKTKQHINEYANAGLRTLILAYRELDEEEYNIFNKEFMETKNIVSADRDHIVEEISEKLEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPETKSLEKMENKSAAAAAIKASVLHQLREGIALLAAFDENSEALALIIDGKALTYALEDDVKDLFLALAVGCASVMCCRSSPKQKALVTRLVKIKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLMHGHWCYRRISSMICYFFYKNIAFGFTLFFYDIYASFSGQDAYNDWFLSLYNVFFTSLPVIALGVFDQDVSNRLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCIKAFDNQAFREGGEVAGLEFLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGGIIFWYIFLLAYGAMDPLLSTTAYKVFIEACAPALSYWLITLLVLVASLLPYFTYASIQMRFVPMFHQMIQWIRNDGQATDPEYVDVVQQRSIRHTTVGFTARFEASKDRLKSENH.	1208

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g03433	1207	FunFam	Phospholipid-transporting ATPase	713	917	-	-
	Seca4g03433	1207	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	492	714	IPR023299	GO:0000166
	Seca4g03433	1207	FunFam	Phospholipid-transporting ATPase	118	288	-	-
	Seca4g03433	1207	PRINTS	P-type cation-transporting ATPase superfamily signature	877	896	-	-
	Seca4g03433	1207	PRINTS	P-type cation-transporting ATPase superfamily signature	426	440	-	-
	Seca4g03433	1207	SUPERFAMILY	HAD-like	421	932	IPR036412	-
	Seca4g03433	1207	SUPERFAMILY	Calcium ATPase, transmembrane domain M	54	1154	IPR023298	-
	Seca4g03433	1207	Gene3D	-	109	288	-	-
	Seca4g03433	1207	NCBIfam	phospholipid-translocating P-type ATPase	57	1162	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Seca4g03433	1207	SFLD	Haloacid Dehalogenase	410	928	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g03433	Seca-Chr4	59889659	59896956	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g03433	1	1203	Primary Pumps ATPases	AT1G68710	68.921	0.0	1778

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g03433	K01530		-	gmx:100797039	1998.79

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