Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03402 ATGCAGGAAATACATTCCATCGGCGGCGGAGATAGGAGGCTGAGGCCACACCACCACAACCAGCAACTTCAGGCGTTGAAGTGTCCCCGATGTGACTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAAAACTGCCGCAGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGCGGTTGCCGGAAATCAAAGCGCTCCAACAAGCCTAACAACAACACTACAACCTCATCCTCCACTGCTCCGGCATCCGCACCAACACCGCAACCGCAACCACAACCACCACCAGAGCACAAATCGAACTCTCACTCCGGCAGCGAAAGCTCCACCCTCACCGCCGTCGCTGCCACGGAGGCGATGTCGGCGCCGACATCAAACCCTCCGTTGGAGGACATTCGCGAGACCAAGGTGTTCGCGAACCCTTCTTTGGAGCTGGAAAAGGGAGGTGGTGGCGTATTACGGAGCTTCACGAGCCTCGTCACTTCAACCAGCAACGCATTGCCGTTTGGGTTTGGGAATAATAACTTCCTCGATGCGTCGTCGTTTCGGTTCGGGACTAATCATCAGCAGGGGAACGATCAGGTACACGTGGCACCAGGTGGTGGCCCGTATGGTGAGTGCCAGTGGCAACAGCAGAAGGTGATTGGCTTGAGCGGTGATCATCGCCATCAGGAGTTTGAGGAGGCGTCGCTGCTGCATCACACGGTGCCTGTTGAGTTTTCTTCGCTGCAAAATAAAACTGAGCATGGTGGAGGATTTGGATCGTTGGATTGGAATGCCGGTGCAGATCAAGGTTTGTTTGATCTTCCTAACACCCTTGATCAGCCTTACTGGACCCACACTCACTGGTCTGATCAAGACAATTCTACTCTCTTTCATCTTCCCTAA 930 0.5473 MQEIHSIGGGDRRLRPHHHNQQLQALKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPNNNTTTSSSTAPASAPTPQPQPQPPPEHKSNSHSGSESSTLTAVAATEAMSAPTSNPPLEDIRETKVFANPSLELEKGGGGVLRSFTSLVTSTSNALPFGFGNNNFLDASSFRFGTNHQQGNDQVHVAPGGGPYGECQWQQQKVIGLSGDHRHQEFEEASLLHHTVPVEFSSLQNKTEHGGGFGSLDWNAGADQGLFDLPNTLDQPYWTHTHWSDQDNSTLFHLP. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03402 309 MobiDBLite consensus disorder prediction 70 125 - -
Seca4g03402 309 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Seca4g03402 309 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g03402 309 MobiDBLite consensus disorder prediction 79 98 - -
Seca4g03402 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 203 IPR045174 GO:0003700|GO:0006355
Seca4g03402 309 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g03402 309 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Seca4g03402 309 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03402 Seca-Chr4 59359027 59359956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03402 11 306 C2C2-Dof Transcription Factor Family AT5G60850 39.241 6.16e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g03402 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03402 - - gmx:778116 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03402 4 59359027 59359956 Seca4g03402 4 59359027 59359956 ECH