Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03394 ATGGGGAGAGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACCTTCTCTAAGAGGAGGTCTGGTTTGCTCAAGAAAGCACACGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCTCTTATAGTTTTCTCCAACAAAGGCAAGCTCTTTGAGTTCTCCAGCGATCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGATATTCATATGCGGAGAGGCAGCTTGTTGCAAATGATATTCAGCCACAAAATGAAAATTGGACTCTAGAACACGCAAAACTCAAAGCAAGATTGGAAGTTCTACAGAGAAATCAAAGGAACTTTATGGGAGAAGAACTTGATGGACTAAGTATCAAAGAGCTTCAGAATTTGGAACATCAACTTGATTCTGCTCTCAAACACATCAGATCACGAAAGAACCAACTCATGTATGAATCTATTTCAGAGCTCAATAAAAAGGATAAAGCCCTTCAGGAACAAAACAACTTGCTTGCTAAAAAGATAAAAGAGAAAGAGAAGGCACTGGTTCAACAGGCACAAATGGAGCAACAAAATGATGATATGGATCTAGCCTCCTCTGTCCTTATAGCTCAACCAATGGAGACCCTAAATATTAGTGGTTTACATGATGCAGAGGTGATGGAGGAGACAATGAAGGAACCTCAACTCAACCTCAAGTTAACACCTTTCTCCCACCTTGGATGCTTCGTCCAATAA 732 0.4112 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLFEFSSDPCMERILERYERYSYAERQLVANDIQPQNENWTLEHAKLKARLEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNLLAKKIKEKEKALVQQAQMEQQNDDMDLASSVLIAQPMETLNISGLHDAEVMEETMKEPQLNLKLTPFSHLGCFVQ. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03394 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 Coils Coil 89 109 - -
Seca4g03394 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Seca4g03394 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Seca4g03394 243 Coils Coil 152 189 - -
Seca4g03394 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca4g03394 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g03394 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g03394 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Seca4g03394 243 Coils Coil 126 146 - -
Seca4g03394 243 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g03394 243 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03394 Seca-Chr4 59200475 59213832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03394 1 242 MADS-box Gene Family AT1G26310 57.812 4.78e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca4g03394 K-box 4.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03394 K09264 - gmx:100816836 355.14