Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03391 ATGGAGTCTTGGAGTTATGTTCCTGAAGATAAAGGGTATGTCTCTAATGATTCCCTTTCGCCTCCCAACACTCTTGGGAGAAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCATCTAGTTTTTCCAATGACATGTTGGCCTTAGGTCAGCATAACATTGAGAATCAAGGTTTTGAGGAATTGGGGTTTCCTGGAATGTTGGGGAAACAATTGTCTGATGATCCAATTGGTACTATTCAGAGCAGAAAGCTGGATAGTGGTGTTGATTGTAGAATTACTAGCTCTGTTGTGGCTACCCCAAATGCATTTTCTGCAAGAGAGGACTTCAATTCTAAGCTTTCAAACTCTAATGGCTACAATTCACTCATTGATTTAAAGCTGGGTAGATTTGCTGATCATGGGGATGCTATGGCTCCAACATTTTCCAAGGGTGCCCCTATTTTGTCTTCATCTGAGTCCTCAACACCCCCCAAGAGGGTGAGAGCTTCAGGGGTACATTCTCAGACTGCACACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGACATAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTGATAGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCAGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCCGGGGACTATGCTAACATCAGCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGGGTCTTATCTTCTGAGAAATATGGAACAAGTGACTGGTGGAGACCTATAAAAGCTGAAGATGGCACTAGTTTCAGGCCTCTTTCTTCTATTCCAATTACCAATGGACATTCTCAATCAAGATCTCTATTTCCTTCATATAGTGAAAAACAATTCCCCTTTCTTCATGATAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAATAGTCAATATCCACCTGGCCTTGGGGGTTCCAATTCTGGCTCGCAATCATTATTCCAAGACACCTCCTTAGGAAACGAGGAGTTCAATGTTTTTGATACAGAATCAACTGTCCAAGGATTTTCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCGTGGCTCGCCCCTTGGTTATTCCAAGCAGCCATAGCCATTACAACATGAGCCATGTTTCTGAAAAGTTGATAGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGACAGGTTCCCATCTGAATTGAATCCTGCAGATGGAAGTCATCTTAGTCCGATATTGATATCAGACAATAATGAAATTGTCAATTTTGAAATGGCAGATGGGATTTTCCAAGGATCAGATTTTGTGAATGTCAAAAATCGTCTTTCCTGTGAAGATGTCCCCACCATTGACTTGCTTCAACTGTCATCACAACTTCAGCGAGTCGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1659 0.4316 MESWSYVPEDKGYVSNDSLSPPNTLGRSKGSFLGWELKTPSSFSNDMLALGQHNIENQGFEELGFPGMLGKQLSDDPIGTIQSRKLDSGVDCRITSSVVATPNAFSAREDFNSKLSNSNGYNSLIDLKLGRFADHGDAMAPTFSKGAPILSSSESSTPPKRVRASGVHSQTAHCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFPGTMLTSASFICQEILPSGVLSSEKYGTSDWWRPIKAEDGTSFRPLSSIPITNGHSQSRSLFPSYSEKQFPFLHDNGATSATGSIFCENNSQYPPGLGGSNSGSQSLFQDTSLGNEEFNVFDTESTVQGFSGISDSGCALSLLSSQSQNSSSQSSGIPVARPLVIPSSHSHYNMSHVSEKLIGISSQASSGVSDRFPSELNPADGSHLSPILISDNNEIVNFEMADGIFQGSDFVNVKNRLSCEDVPTIDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03391 552 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 112 538 IPR044817 GO:0003677
Seca4g03391 552 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g03391 552 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Seca4g03391 552 MobiDBLite consensus disorder prediction 238 257 - -
Seca4g03391 552 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Seca4g03391 552 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Seca4g03391 552 Coils Coil 520 540 - -
Seca4g03391 552 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Seca4g03391 552 Pfam SBP domain 174 247 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03391 Seca-Chr4 59003892 59009435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03391 125 329 SBP-box Gene Family AT1G69170 48.113 1.65e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g03391 SBP 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03391 - - gmx:100777766 908.672