Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03385 ATGGGGTCTATTTGGTTATCTACCATTGGATCTGTTGTACCTCGTGGTGGCAGTTACTTGGCAGTGTTACTCCTGTTACTGCTTTCTTGCTCCACATTCACTCCTACAGAAGCCTATGATGCTCTTGATCCAACTGGAAATATAACAATCAAATGGGATGTTATTAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTTCAACAGTATAGACATATTCAGGCCCCAGGATGGACATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGAGACTGTTCAAAGTTCAAAACAGGCATCCCACATTGTTGTAAGAAGGACCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTCTTAAACTCATGGGGTCAGGACCCAAACAATGCAGTAAGTTCTTTTCAGGTTAGTGTTGGTTCTGCTGGAACAACTAACAAAACAGTCAAATTACCAAGAAATTTTACCCTCAAAGCACCAGGACCTGGTTATACTTGTGGCCCTGCAAAGATTGTGAGACCAACTAAATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCTTGATGACCTGGAATGTTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACACTGTTGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGAACCTGGCAGCTGTGTAAACAGTCCAGACTCCCCACATTTAGCTTCAGTTGTATCATCAGCATCAAGCAAAGATATAAATACACCTCTAGTCCAATGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTTAAGCTCAATTATAAGGAGTACTGGAGGATAAAGATCACAATAACAAATTTCAATTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATATTACTCAGCTTTTCAGCTTTCAGTACAAGCCACTAACACCCTATGATGGCTTAAATGATACAGCTATGCTGTGGGGTGTCAAATTCTACAATGATTTTCTTTCTACAGCTGGACCCCTTGGTAATGTGCAGTCTGAATTATTATTTAGGAAGGACAAATCAACCTTCACATTTGATAAGGGATGGGCTTTCCCAAGAAGGATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCTTACCCTTGGTTGCCAAATGCAAGTTCAAAACTAGTTTTCTCTTTACTAAGTACAGTCATAGCCACTTTAGCTTCTTTGTTGATCTTATTAAATCAATCATAG 1380 0.4109 MGSIWLSTIGSVVPRGGSYLAVLLLLLLSCSTFTPTEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKTGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPNNAVSSFQVSVGSAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVRPTKFITNDKRRTTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTEPGSCVNSPDSPHLASVVSSASSKDINTPLVQCTSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNITQLFSFQYKPLTPYDGLNDTAMLWGVKFYNDFLSTAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVIATLASLLILLNQS. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03385 459 Pfam COBRA-like protein 62 225 IPR006918 GO:0010215|GO:0016020
Seca4g03385 459 PIRSF COBRA 13 458 IPR006918 GO:0010215|GO:0016020
Seca4g03385 459 PANTHER PROTEIN COBRA 27 446 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03385 Seca-Chr4 58950069 58954807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03385 20 456 COBRA Gene Family AT3G02210 72.769 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03385 - - gmx:100815779 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03385 4 58950069 58954807 Seca4g03385 4 58950069 58954807 ECH
Seca12g01297 12 12709348 12711219 Seca4g03385 4 58950069 58954807 PCT