Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03381 ATGTATAATCAAGTGAATCGTGGTACTCATTTGGGACAAGGTTCTATCCCTCCAGTGGGGCTGCCGCCACCGCCACCGCCGCCTGCATATCAGCAGGCTCCACCTCCGCCGCCACCTCATTTTCAGCATTTTGTCCCACCACCTAACATGGGTGGACCTCCGGCTCCTCATATTTATTTACATGGACCTCCAACCACTTCTTCCTCATTTATGCCAAATGCAGGACCATCTTATACCATCCCTTCTCAAATGCAGCATGGAAATGGCATGGCACCGCAAATGTTCTCTAACCCCATTGGACAGAATTCACAGCATTCTTCAAATTTAGGGGTCCAGAGCCATCCTATTCCGCCCCCAGTTCCCCCTCCTATTGGCCACTCTCACCAGGAAACATCATGGGCTCCGGGGCCACCACCTAGAGTATTGCCACCTCCTCCCACTTCTTCCCAAGGACAAATTTTGTATAATCCTCCTTTTCATCCACCACCTTCACAGCCTGGTGACATTCAGAATCTTCAGCGAAGCCATAATACTCCTCCTCCTCCACCACCCCCTCGTGGATCGGGTTTCCTTCCTCCTGCTCCGGATGGAGTGTATCTCCATTCGAATGTTGGGAATTACCAAGTGCCTTTCATTACTCCTCCACCGCCACCATTGCCGACCTCTCCACCACCGGTTCCACCATCTCCACCACCTCCTGCCCCTCCTATGACTTCTGCATCCTCCCACACTGCACATTCTGATGATCCTAACTCAACGAAGGTTTCTGGCTTTGAATCAAAGGCTGTGGAATCAGTTGATGGAGTTGTGGCTTCCTGTCCATCTGGTATTGCACCTGTGCACAATTCTGATCCCAATGAGGACAGTGGAAGTTGTAGGGAGGTCACTGTTGCTGACGGAGATGAGCTGTTGTCATCTAGAAGTGTAAATTTGGATCTTCCCCCACCTCCACCACAGCCTAGAGAAGAAAAAACTGTGAAGAAGATTGAAGCTTTGTGTCAGCTTATTGCTGGGAATGGTGCTAATATTGAAGACAAGGTTCGTCAAGATGAATTTCAGAATCCTGAATATGCATTTTTGTTTGGTGGCAACCCAGGAACTGAAGCTGCAATTTCTCACACGTATTTCCTGTGGATGAAAAAGAAATATAATTTGGAACCTAGATGGGATGAAAAGAAAAGTGAATCACAGCTAAGGCCTCTAGCAGGAGACTCTTCAGGGAAACAGTATCACCTGCATGCTGCTGCAACTGTAAGTGCTGATTCTGACATGGAGATGGAAGATGATATCACGCCTTCTCCCAAGGACCAGGGGTCAAAGTATGCAATTGAGACCCTAACTCAGCAGCATGATCGTGGTGATGAGGTTTTTAGCATGAATAAGAAAATACACAAGCTGCAGAATTCAACAGAAGAAGACCCTGCCAAGGACATCTTATCCAGTGGACCAGGGCTTTTAGCGGATAATGAGCCCATGAAATCTGCAACATCAGTTACCAAGGTTCATAGTCCTGTTAATGACTCACCTGAAGTGGCTGAATTCCCCCTGGCCACTGTTTTGGAGAGATCTTCTGCTCCTCTAGATAATGATTTTATACGAAATGGTACTTCTGATCATAATGAAGTCACTAATTCTAATAGAGATTCTGGGAGAGATTCTGGGCAACTTATATGGAGTGGCAGCCCAATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGATAATGAAGATGAAAGATGTGCTGTAGATGCTAATGTTTTAACTGTCTCAGCTGGAGCTGACACTTGTGTTTCAGCTGCCCATAAAGATTCCAAGAGTTATCTGGAGACTGATATTGGATCTAATAGTCCTTCCAGTACTCGAAAGGGGCTTGGGCTGCTGTCCAAAACATCACAGAATGATTCAGAAATATCTCCACATTTAGTACAAGAGTCTAAGGGAACCTGTAAAAGATCTGTCTCATGTACTGGTGATGGATGTATTGAGAATAATCTTGAAAATCAGGTGTCTGTTAATTTTGCTTCTTCGATAGAGGCTTTCCAGGGAAAAGAAGGGTTAAGTGGTGCTGGCATTGACAGTGATCATAAGAGTGGTGATGCTGAACAGGAAGATGAGAATGAGAGGAAAACCTCAAAGTTAGAACAAACTATTCTGAAAGTAGATAAATTTGGAAGGCTTCCCAGAGAAGGTGCTACAGATAGCGACTCTGATGATTCTTGCTATCATCAGACTAGGAGGAAAAACAAAAGAGATAGAAGTTGGAGTCGCAGCCGGTCTCCCCCAGACCGGAGGAGGAGGAGGAGCCCCCGGAGGAGAAAGGATAAAAGAAGCCGGTCTCGCAGCTGGTCCCCTCGGCGCCGTAGAAGTAGGAGCAGGTCTCCGATCTTAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAGAAAGGACAAGGGTCAGTGCTTTGCTTTCTCTCGTGGAAAGTGCAATCGCGGAGCATCTTGTAGGTACATACATCATGAATCTGACAAGAATGCTACTTCAAGGCGCCATAGGAATAAACATGATCTGGAAGTCTATTCTCTTGAAAAAAATTCTAGGGGTAATGAAGGCATGAAGAATATTTCTTCTAAAATGTCAGAATATGAGCATGATGGAGTCAGAAGTCAGGATGTAGATCTCTGCCAGAATGTAATTGGCCAGGAAGTAGTGCAGAGAAAAGAAGATTCCGGGAGGCATGCTGCTGTGTCTGCTACCCTTGGTCTTGATGGTCAACCAGTTAGCAATCCAAGTAAATCTGAAGGTCTCAGTGAGGTTGCTCCTAACGTGCAGGAAAACTTGGTAGTCAGAGAGGAGCCAAAAGCTTTAATCCATGAAAATGATAGTTTTCAGAAAGAAGTGAACTCTCATCAGCAACACTTAGCTGATGGCTTTCACCCTGAAGTTTTAAGCAGTGGTGATGCTTTTAAACCATCTGGTGGTACACCTAAAGATGGCATTCCCTCAGAAGATGGTTCATTTGTTCAGCAAGTACAGTCTAATATTTCTGTTGGAGTTCCAGAACATTCTGGTCACCCATCTCAGCTTTTAAATGTGTCTTTTGTGACTGATTTGTCATCTGATAAAAGATCAATGGTTTCTGCTAGTGCCAATAAGGTTTCTGGCAGTGAACCCTTAACATCAACTCAGCTACAGTCAGCCACTAGTTCCACTGGTCCATGTGTCACATCAGAGCAGCCTTCAATGCATGCTCAGGCTTCCAAAGACTTACCTCCACATAGTGGTTCCTCAGTGGAATTCCCGGATCATACTTACCAGTTGCCTGCTTCTGTTGTTTCACATTCTCAGGGTGAAAATGCTGTGCATATGCCACAAATTTCAAGGCAATATGATATGATGCAGCAAAATGCATTCTTTCCTTTCCAATCCACTACCAGAGAAAAGTTTGAGCCTTACCCAGCTCCGTTACACACACCAAATTCTCACTTCAGTGTACATCCTAATAGCTCTTGGACATCCTTGCCGCCGCCCCCGCTGCCCCCACCATCACAAGCGATGTATAATTCCAGTTCAAACATGGGAGTTGCAAAATCATTTATTTCTTCAGAATTTAATCAGAGTCAATTGCATTCGAGAACTGACTTTGTTTCTCAGACTTCCATGAATCCTGGATTATCAACTCATTCTCAAAGTTCTAAGTTTCATGATCAAGCATATCCTCCAATGCAGGATCATTCACGAACTTTCATGCTTACAGAGCCTTTCTCTCCAAACCATCTCCCTCGGGGGAACCCAGCATGTCAATTGCTTCCAGGTCCTAATCTCAGTAGAGAAGACCATTGTAATCAGCTTTCAATGCAGGATACAAAATTTTCAAGCTCCACGTCTTTTAGTGGTCTGCATCCTCAACCAAAGCAATTTTCCTGGGAGTCAGATGTGAACAGACTGCAACCTTCTTTGGGTAGCATGTTGCCTCCTGAAGGACATTTCAAGACCTCTTCTCACATTCATCCATTATCACAGAAGCAGCAATCAGTTTATAGTTTTCAATATTCTGCATCTGATGTTAATTTGGGTGTGCCTGGTGAGACTGTAACTGTATCCAGATATCCACCAGATGTTCTCGATAGTAATCATTCAACTTCTCTTCCGACTTTTGGAGTATCAAGAATTTCTGCTCACTATAATCCTTATGCATCAACCTTTGAGCAGCCACTAAGTTCCAAATTCAGTTCAAGTATTTTTAGACAAGAAAATGACATAATCCATGAAAACACTTGTGGCTCTTCTAGATTGAACCATACTCCTATAAATAGGGAAGGGGATGGCATTGGATCAAGACAGTCAGCATCATTACCAAAACCAGCTAGAGCTGTTGTTGGTCAGATTCTACCTAGGTCTGGTGGTGAACAATATGATCCACTTTTTGACAGCATTGAGCCATCATCCTCTTTGAAGAAATTTGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCCAACATCAGCCTAAGGCCCAAAAGTGCGTATATGTCTTTGGACATGGAAGAGAAGAAGCTTGAGGAGGTTGGAGCTGTTGCCTCTACCACTTCTCAAACTAATGATGAATATGGTGAGACAGCAGATGCTGAAGTGGGTGCTGTTGAAAATGAGAGCCTAAGTAACCATGTGGATGTTGCAAACATGACTTCAGGGGAGGTTGAGATTAATCAGATCAAGTCCCCAGGGAAAAGAAAAAAGAGCAAGGATTCCAGATCTATGAAATTGTTCAAAGTTTCTATTGCAAACTTTGTAAAGGAGGTTTTGAAACCGTCATGGCGACAGGGTAATATGAGTAAGGTGGCTTTCAAAACCATTGTTAAAAAGACTGTAGATAAGGTGTCAGGAGCCATGAAAGGTCACCGTGTACCCAAGTCTCAGGCGAAGATAAGTCAGTACATTGACTCATCACAGCGAAAGCTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTCAAGGTGTGA 4992 0.4415 MYNQVNRGTHLGQGSIPPVGLPPPPPPPAYQQAPPPPPPHFQHFVPPPNMGGPPAPHIYLHGPPTTSSSFMPNAGPSYTIPSQMQHGNGMAPQMFSNPIGQNSQHSSNLGVQSHPIPPPVPPPIGHSHQETSWAPGPPPRVLPPPPTSSQGQILYNPPFHPPPSQPGDIQNLQRSHNTPPPPPPPRGSGFLPPAPDGVYLHSNVGNYQVPFITPPPPPLPTSPPPVPPSPPPPAPPMTSASSHTAHSDDPNSTKVSGFESKAVESVDGVVASCPSGIAPVHNSDPNEDSGSCREVTVADGDELLSSRSVNLDLPPPPPQPREEKTVKKIEALCQLIAGNGANIEDKVRQDEFQNPEYAFLFGGNPGTEAAISHTYFLWMKKKYNLEPRWDEKKSESQLRPLAGDSSGKQYHLHAAATVSADSDMEMEDDITPSPKDQGSKYAIETLTQQHDRGDEVFSMNKKIHKLQNSTEEDPAKDILSSGPGLLADNEPMKSATSVTKVHSPVNDSPEVAEFPLATVLERSSAPLDNDFIRNGTSDHNEVTNSNRDSGRDSGQLIWSGSPIRLLQDYASDDTSDNEDERCAVDANVLTVSAGADTCVSAAHKDSKSYLETDIGSNSPSSTRKGLGLLSKTSQNDSEISPHLVQESKGTCKRSVSCTGDGCIENNLENQVSVNFASSIEAFQGKEGLSGAGIDSDHKSGDAEQEDENERKTSKLEQTILKVDKFGRLPREGATDSDSDDSCYHQTRRKNKRDRSWSRSRSPPDRRRRRSPRRRKDKRSRSRSWSPRRRRSRSRSPILRRSGDFRGENVRKDKGQCFAFSRGKCNRGASCRYIHHESDKNATSRRHRNKHDLEVYSLEKNSRGNEGMKNISSKMSEYEHDGVRSQDVDLCQNVIGQEVVQRKEDSGRHAAVSATLGLDGQPVSNPSKSEGLSEVAPNVQENLVVREEPKALIHENDSFQKEVNSHQQHLADGFHPEVLSSGDAFKPSGGTPKDGIPSEDGSFVQQVQSNISVGVPEHSGHPSQLLNVSFVTDLSSDKRSMVSASANKVSGSEPLTSTQLQSATSSTGPCVTSEQPSMHAQASKDLPPHSGSSVEFPDHTYQLPASVVSHSQGENAVHMPQISRQYDMMQQNAFFPFQSTTREKFEPYPAPLHTPNSHFSVHPNSSWTSLPPPPLPPPSQAMYNSSSNMGVAKSFISSEFNQSQLHSRTDFVSQTSMNPGLSTHSQSSKFHDQAYPPMQDHSRTFMLTEPFSPNHLPRGNPACQLLPGPNLSREDHCNQLSMQDTKFSSSTSFSGLHPQPKQFSWESDVNRLQPSLGSMLPPEGHFKTSSHIHPLSQKQQSVYSFQYSASDVNLGVPGETVTVSRYPPDVLDSNHSTSLPTFGVSRISAHYNPYASTFEQPLSSKFSSSIFRQENDIIHENTCGSSRLNHTPINREGDGIGSRQSASLPKPARAVVGQILPRSGGEQYDPLFDSIEPSSSLKKFDFDQKQEVTGESNISLRPKSAYMSLDMEEKKLEEVGAVASTTSQTNDEYGETADAEVGAVENESLSNHVDVANMTSGEVEINQIKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV. 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03381 1663 MobiDBLite consensus disorder prediction 529 556 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 176 191 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 611 644 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 17 60 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 417 439 - -
Seca4g03381 1663 SUPERFAMILY Surp module (SWAP domain) 313 383 IPR035967 GO:0003723|GO:0006396
Seca4g03381 1663 MobiDBLite consensus disorder prediction 272 325 - -
Seca4g03381 1663 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 389 1662 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 917 934 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 1 260 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 905 934 - -
Seca4g03381 1663 Gene3D - 810 893 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 1044 1079 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 696 747 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 608 644 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 62 113 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 239 259 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 687 812 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 748 795 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 467 509 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 527 556 - -
Seca4g03381 1663 ProSiteProfiles Zinc finger C3H1-type profile. 810 837 IPR000571 GO:0046872
Seca4g03381 1663 MobiDBLite consensus disorder prediction 796 812 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 976 1000 - -
Seca4g03381 1663 MobiDBLite consensus disorder prediction 1044 1096 - -
Seca4g03381 1663 Gene3D Surp module 313 386 IPR035967 GO:0003723|GO:0006396
Seca4g03381 1663 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03381 Seca-Chr4 58748546 58756602 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g03381 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03381 - - gmx:100807768 1913.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03381 4 58748546 58756602 Seca4g03381 4 58748546 58756602 ECH