Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03379 ATGGCAGCAAAGCTCCTGCATTCTTTAGCAGATGACAACCCAGATCTGCAGAAGCAGATAGGATGCATGACTGGAATTTTCCAACTCTTTGATCGTCAGCAAGTTCTCACTGCTCGCCGCATTACCCAGAAGAGGCTTCCTTCTGGTAATTCGCACTTCATTGGTGGCAGCTTGGAAAGGGATTCTAATAGCATACACCATGGAGAAACAGCAACTGATATGAGCTTAAACAAGGGTGTGTTCGAAAAGCAAAGAATTTCAACGGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCGTCAGTGTCCTCTCTGGACTGTAAGGCTGAAGTAGAGGCTCCCTTTGACCGGATTATTTTTCCTGAAACTCCTTCAAGGGACACAGTTATGAACCAACCAACCATCTCTCCCCATTTAGGACGTCACTCCCTTGACCTGAGGGATGTGGTGAAGGACTCTATGCATAGGGATGCTCGAGGACTGTCAGTGAAGACTACAGCCAAAGAGGAATCTGCCTTTTATGCTATGAAGCACAGGGATTCCCCAAGACCTCTTCAGCTGTCCAAATCTGTTGATGGTTCCTATGGAGTTGGCATAGATGGAAAACAAAGTGTGCCTATTGATCTAAAGGAGTCTATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACTAGAGAACTTCCAAGATCATCAAATGAAATAAAAGATGGACACTGGAATTCCATCTCAAAGGATGCTCCTTGGTTTGCTTATGATGGAAGAGAAACAAGCCGTCTATCTTTTGAATCAAGAGATACCATCAAATCCACACCAAAGATAAAAGAGCTTCCTAGACTTTCACTGGATAGTAAAGAAGGTTCATGGCGCAGTTATAGCTCTGATTCAAAACCCAGTCACCTCTCAAGAAATGTTTACAATGGCACATCCACCTCAAATGAAAGATTCTCTAGCCTACAACAGTCAACCCAGAGTCGGCCACCAAGTGTTGTGGCAAAATTAATGGGCTTGGAAACGTTACCGGATTCCTCTTTGGCTGGTGATACTCAATCAAGTTCAACTGAAACTTACTCAGCTCAAGTTAATGATCAGTTTCCAAGATCATCCAAAAGTGGATTCACCAGGCCACTTCGAGTTTCTAATTCTCCAAAAAGTTCATTGAAAGACCCAACTTCCCCAAGGCGGAAGAATCCTGATCTGGTTATGAAACCAATCTCAAGTTCAAGGTTTCCTATTGAACCAGCACCGTGGAAGCAGCAGGATGCAAATCGAAGCTCTCAGAAACAAAGTTCAAGGGCCATAAAGGCTCCAGCAAAAACATCAGATTCATTTCCTTCAGTTTATAGTGAGATAGAGAAAAGATTGAAGGATCTTGAGTTCAAACAATCTGGAAGGGATCTCAGAGCACTAAAACAGATACTAGAGGCAATGCAAGAAAAGGGGCTGCTAGAGAGCAGAAAAGAAGAACAAGGTCCAAATGTTGTTGTAAGTCAAAGTGACTATGAACCAAAAGCTGCCAATCTAATTCCAAATTCCAGGTCAGTAAGGCAACAAAATCCTCAGGGAAACAATTTTCCATCTTCCACAATCAAGGGATCTGACTCTGCAAGGACTTTTGAGTCCCCAATAGTGATAATGAAACCGGCAAAACTCATTGAGAAGACTGGGATTTCTGCTTCATCAGTCATTCCAATTGGTGGCATTTCTGGTTCCCATAAACTCCAAAGTGGTGGTGTATATGTAGATAATAAAAATGGCACATCTTCTACTCGAGTAGTAAAAGATCAGTCTCCTAAAAACATTTGCCGGGATACTTCTGCAGGTTCCAATGATAAGAAAGCAATTATTGCCAAGACTACAAGATCAGCACAATCTCATTCTAGGTCTCAACAACAACACCCAAAAGAGAATAGCCAAAATTCAGTAAAGCACTCGGGATCTGTGAGCCCACGAATGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCCGCCTGCCCCAACAACAGATTCAAACAAACCTAGAAGGCAATCTGGTAAGAAGGCAACAGAATCAGGTTCCCCAGGTGGAAAACAAAGACCCAAAGTCCCCAACTTGCAGCATAGTGATGAGCAACTGAGTGGGATAAGCAATGACTCAAAAAGTTTTAGTTACCAAGGGGATGAAATTTCTTTGCAATCAGATGGCATCACTGTCAACTCAATGATGGATATGGAAGTCACCAGTTGTTTTCAATCTGCTGAAATTAATGACAACCTAAGCCCATCCTTGAAGGCTATGAAGAAATTGGTTTCAGAAACATTGCGGAAAAACTCAACTCAAAGATTGGATGAGGATGAGGCAATTGCAGAACTTGCAACAGATGCCCCGGAACATCCAAGTCCTATCTCAGTTCTTGATGGCTCAGTGTATAGAGATGATCTGCCATCCCCAGTAAAGCAGATATCTGAAGATCCAAAAGCTGTTGATGACCAAGTATGTAAAGAAAATGAGGTTAAAGATCAGTGGAACCCGGCAGATAGCCTTTCATTTAACAGCACAGGATCTGGAGAGATCAATCGCAAGAAACTACAGAACATAGATCACCTTGTTCAGAAGCTTAGACGGTTGAACTCCACTCATGATGAAGCTAGAATCGATTACATTGCTTCCCTATGTGAAAACACAAATCCAGATCACAGATACATATCTGAAATATTACTAGCTTCAGGTCTCCTACTTAGAGATCTGGGTTCTGAATTGCTGACATTTCAACTTCACTCATCAGGTCATCCCATTAACCCTGAGTTATTCCTTGTCTTGGAGCAAACCAAGGCAAGTAGTTTGATTTCAAAAGAAGAAAGCAGCCCTGGAAAAGTTGTCCACAAGAAGCTAAATACAGAGAAATTTCACAGGAAACTCATCTTTGATGCTGTGAATGAAATTCTTGGTGCAAAATTAGGCTCCACCCCTGAGCCATGGTTTCAGCCTAACTGCAACAGACTGACAAAGAAAACCCTCAGTGCTCAAAAACTTCTTAAAGAACTATGCTTTGAGATAGAAAAAATGCAAGCCAAGAAGCCAGAATGCTGCTTAGAAGGTGAAGAGGATGATGGTCTGAAAAGTGTACTATGGGAAGATGTGATGCATGGCTCAGAAAGTTGGACAAACTTCCATGGTGAAATTCCTGGGGTTGTGTTGGATGTTGAGAGACTGATATTTAAGGACTTAGTAGATGAGATTGTGATTGGTGGAGCAACTGGTGTGCGAGTCAAGTCAACTGTTAGGCGCAGGAAACTATTTGGAAAGTAG 3306 0.4226 MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRQQVLTARRITQKRLPSGNSHFIGGSLERDSNSIHHGETATDMSLNKGVFEKQRISTESSRASFSSCSSSVSSLDCKAEVEAPFDRIIFPETPSRDTVMNQPTISPHLGRHSLDLRDVVKDSMHRDARGLSVKTTAKEESAFYAMKHRDSPRPLQLSKSVDGSYGVGIDGKQSVPIDLKESIRVLAKLREAPWYYAETRELPRSSNEIKDGHWNSISKDAPWFAYDGRETSRLSFESRDTIKSTPKIKELPRLSLDSKEGSWRSYSSDSKPSHLSRNVYNGTSTSNERFSSLQQSTQSRPPSVVAKLMGLETLPDSSLAGDTQSSSTETYSAQVNDQFPRSSKSGFTRPLRVSNSPKSSLKDPTSPRRKNPDLVMKPISSSRFPIEPAPWKQQDANRSSQKQSSRAIKAPAKTSDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQGPNVVVSQSDYEPKAANLIPNSRSVRQQNPQGNNFPSSTIKGSDSARTFESPIVIMKPAKLIEKTGISASSVIPIGGISGSHKLQSGGVYVDNKNGTSSTRVVKDQSPKNICRDTSAGSNDKKAIIAKTTRSAQSHSRSQQQHPKENSQNSVKHSGSVSPRMQQKKLELEKRSRPPAPTTDSNKPRRQSGKKATESGSPGGKQRPKVPNLQHSDEQLSGISNDSKSFSYQGDEISLQSDGITVNSMMDMEVTSCFQSAEINDNLSPSLKAMKKLVSETLRKNSTQRLDEDEAIAELATDAPEHPSPISVLDGSVYRDDLPSPVKQISEDPKAVDDQVCKENEVKDQWNPADSLSFNSTGSGEINRKKLQNIDHLVQKLRRLNSTHDEARIDYIASLCENTNPDHRYISEILLASGLLLRDLGSELLTFQLHSSGHPINPELFLVLEQTKASSLISKEESSPGKVVHKKLNTEKFHRKLIFDAVNEILGAKLGSTPEPWFQPNCNRLTKKTLSAQKLLKELCFEIEKMQAKKPECCLEGEEDDGLKSVLWEDVMHGSESWTNFHGEIPGVVLDVERLIFKDLVDEIVIGGATGVRVKSTVRRRKLFGK. 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03379 1101 Coils Coil 865 885 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 290 332 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 518 538 - -
Seca4g03379 1101 Pfam Domain of unknown function (DUF4378) 897 1078 IPR025486 -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 704 722 - -
Seca4g03379 1101 PANTHER LONGIFOLIA PROTEIN 1 1099 IPR033334 GO:0051513
Seca4g03379 1101 Pfam DUF761-associated sequence motif 325 348 IPR032795 -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 423 448 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 576 722 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 347 392 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 345 448 - -
Seca4g03379 1101 MobiDBLite consensus disorder prediction 580 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03379 Seca-Chr4 58692255 58698416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03379 138 1100 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 48.528 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03379 - - gmx:100787391 1713.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03379 4 58692255 58698416 Seca4g03379 4 58692255 58698416 ECH
Seca12g01313 12 12858678 12863737 Seca4g03379 4 58692255 58698416 PCT