Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03375 ATGGGGTTGCGGGCAGCAAGTAGAAGCCTGCCTATTCTCCGAAATTCATCATCTCACTCTCACTCTCACTACAGGAAACAAATCTCACTCGCTAATCTCTTCCAAAGCTACGGTTTCCCCTCCTCCCACCTTCCCTCCTTTCTCTCCAACAATCGCTTTCTCTTCGATTCCGATTTTTCCGACCTTCAGAAATCCCTCACCACCCTCTTTTCCTTCCGAATTCCCCAGAAAACCCTCGTTTCCCTCATTCGCGATTGCCCCAGCGTGTTGGAACACCCGTTTCTCCATAACTGGGAATCGCGTTTTTCAGAATTGAAATCCCTGGTTCCCAACCCTTCTCCTTTGATGCTCGCGAACTTGCTGCAATGTTCTCGAAGGTTCAACCTCGACCCGGTTGAGCTTTCCCACAAACTCGAGGTTTTGAAGGGTTTAGGGTTTTCTGGCGCCGCCATGGCTAGGGTTTTGGAAGGGTTTCCTAGCGTGCTCGTGATGAGCGAGAAGGAAATCGTTAGTGTAGTTGATTTTCTCGTGGAATTTGGGGTCCCCAGGGATGAGGTTGATCGAATTGTTGACTTGTATCCTAGAGTTTTGGGATTTCGGGTGGAAGATAAGTTGAAACCGTTGATTCAAGAGTTGAGGGGTTTGGGATTTACTCTCCGTGAGGTTAGAAAAGAGATAGTTAGGGAGCCAAGGGTTCTAGGATTGGAAATTGGAGAATTTTCGCGGTGTTTGAGGTTGCTGGAGGGTTTGAAATGCAGGGAAGCAATCAAAGAGAGGATTTTTGGAGAGGGTCTGCTGAGGGCTTGTTTTGAAGTGAAACTGAGAGTGGATTGCTTGTGTGGTCATGGTTTGATTCGTAGGGATGCTTTTAAGGTATTGTGGAAGGAACCAAGGTTGATCACTTATGATTTGGAAAGTATTGAGAAGAAGATTGAGTTTTTAGTCCATAGAATGAAGTATAGTGTTGATTGTTTGCCTGATGTTCCTGAATACTTGGGTGTGAATTTTGAAAAGCAGATTGTTCCTAGATACAATGTGATGGAGTATTTGAGAGCAAAAGGTGCAATTGGTTTTGAGGTTGGATTGAAGGATCTGATCAAGCCCACTAGGCTTAAATTTTATAATCTTTATGTCAAGCCCTACCCGGAGTGTGAAAAAATATATGCAAGATTTTCAGGAAATCTTGAAGTTAAAAGCAAGCATCCAGCTGGACTCTGGAAACTCTTTAAACCACAGAAGTTCCCTGAAACTGATGAAGATGTGAAGAACATGAAATCTTTCATGGACTCACTGGTGTAG 1299 0.4434 MGLRAASRSLPILRNSSSHSHSHYRKQISLANLFQSYGFPSSHLPSFLSNNRFLFDSDFSDLQKSLTTLFSFRIPQKTLVSLIRDCPSVLEHPFLHNWESRFSELKSLVPNPSPLMLANLLQCSRRFNLDPVELSHKLEVLKGLGFSGAAMARVLEGFPSVLVMSEKEIVSVVDFLVEFGVPRDEVDRIVDLYPRVLGFRVEDKLKPLIQELRGLGFTLREVRKEIVREPRVLGLEIGEFSRCLRLLEGLKCREAIKERIFGEGLLRACFEVKLRVDCLCGHGLIRRDAFKVLWKEPRLITYDLESIEKKIEFLVHRMKYSVDCLPDVPEYLGVNFEKQIVPRYNVMEYLRAKGAIGFEVGLKDLIKPTRLKFYNLYVKPYPECEKIYARFSGNLEVKSKHPAGLWKLFKPQKFPETDEDVKNMKSFMDSLV. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03375 432 Pfam mTERF 129 240 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 Pfam mTERF 274 367 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 Gene3D Transcription termination factor 3, mitochondrial 119 392 IPR038538 -
Seca4g03375 432 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 187 218 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 117 147 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 152 182 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 223 253 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Seca4g03375 432 FunFam Transcription termination factor MTERF15 mitochondrial 166 388 - -
Seca4g03375 432 PANTHER CGI-12 PROTEIN-RELATED 13 381 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03375 Seca-Chr4 58478642 58479940 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g03375 mTERF 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03375 - - pcin:129319850 607.446