Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03374 ATGATGATGATGATGGCAAGTTCAAGAGAAGGTTATGAAGCTAAGCAAGAAGGTGACACCATTAATATTGCTGACAAATTCTCCAAGATATCTTCTACTTCAAGACAATGGTCAGGGTTCAGAAATCCAAGAATTGTGAGAGTATCACGTTCTTTTGGAGGAAAAGATAGACATAGCAAGGTTTGCACCATAAGAGGATTAAGGGACAGAAGGATTAGGCTCTCTGTACCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTCAGCCAACCAAGCAAGGTGATAGATTGGTTGCTTGAAGCTACTAAATTAGACATTGATAAGCTTCCTCCACTTCAATTCCCTCAGGGCTTTTCTCAATTTCATCATCACCATCCACAAACCCTACTTCCTTTCCATGATTCAAGTGCTTCCTCTGAGCTCTCACTTGGACCTTTCTATGATGCTAATTCCACTCTCTTAAGGGATGGTGGAATTCAAAACCTCATGGAAAAATCAAGGTTTTGGGACATGGACTCATTATCAAGAGTTAAAGGCAAGGAATTAGCTGAAAGAGGGTACAATATCACAGATAAAGGAAAGTGGATCAAAACAAATGAGCAAGAAAATCAAGAAGGAGTGGTAGTTGGAAATGCAAATTACAACAACTTGCAGAAGCTTTTCCCTATGAGTACTCATCACTCTCCTTTACCTGCTGGTTTGTTAAACAATGCCATGTCATATAACTCCTACCATTCAGAACCTTCTAGTCTGTCTTTATCCCAATTTGGAAGTCATGGATTGTTTCATTCTCAAATAGATCATCCCCATCAAAGCAATGGTGTGCAATTTCCATCTTCTTTGAATGTACCTTCTTCAGCTGGTAATTCCCAATTATTGTTTGGTCCATCATCTGCTGCTACACCATCACTTTTCACTCCTTTTATGACAGAAAATGATCCAAGTCAAAGACAATTCAATAGCCATATCCATCAGTTTCTAAACTCATCATCAGGTTCTTCACAACTATTGCCTCATCCTCTCATTCCATCTCTTCACTCATTCAATTCAACTGCAATCAGACCCTTTCCATCACCATTTAGTTCCAAGCTTATGGATTCTGATAACAATAACCGTAATAGCCAACCAGATAAGGGTAGTGATGCTCGTTCTAGATCTTGA 1170 0.3915 MMMMMASSREGYEAKQEGDTINIADKFSKISSTSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKLDIDKLPPLQFPQGFSQFHHHHPQTLLPFHDSSASSELSLGPFYDANSTLLRDGGIQNLMEKSRFWDMDSLSRVKGKELAERGYNITDKGKWIKTNEQENQEGVVVGNANYNNLQKLFPMSTHHSPLPAGLLNNAMSYNSYHSEPSSLSLSQFGSHGLFHSQIDHPHQSNGVQFPSSLNVPSSAGNSQLLFGPSSAATPSLFTPFMTENDPSQRQFNSHIHQFLNSSSGSSQLLPHPLIPSLHSFNSTAIRPFPSPFSSKLMDSDNNNRNSQPDKGSDARSRS. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03374 389 MobiDBLite consensus disorder prediction 361 389 - -
Seca4g03374 389 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Seca4g03374 389 MobiDBLite consensus disorder prediction 361 380 - -
Seca4g03374 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 341 IPR005333 GO:0003700
Seca4g03374 389 Pfam TCP family transcription factor 54 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03374 Seca-Chr4 58450283 58452566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03374 38 380 TCP Transcription Factor Family AT5G60970 41.808 1.47e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g03374 TCP 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03374 - - gmx:100804574 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01316 12 12899074 12899433 Seca4g03374 4 58450283 58452566 PCT