Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03347 ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAGAAGGAAAAAGCTCGTAAGACAACATTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTATGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGTGTAATTATTTATGGCCCCAACTTTGATAACCAACAACTAGTTGAACCTGAAACATGGCCTCAAGACAGAAGAGAGGTATACCGCATAATTCAAAAATATTATGACACCACTAGTGATAGACGTCCAAAGATCTATGGTGTGCAAGAGTATTATCAAGATAGAATGAAAAAGGTTGAAGGTGAGATTTCAAAAATATGCAAAGACAAACTCAAAATAATATACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAACTAAGGATTTTTGTTAGCTTATTGGATTCTAAGCTTGATGCTTGTAGTCAAAGGATGAATATGTTAAAAGGGGATCACAAGGGAAAAGCAATAGCTGAATCAGATAATATGATTATGACACTTAGTCCCTACTTAGCCTCAAATCCAAGTAGCTACCTCAATCTCATGCAGAACATTGCTCAAGCACAATTTTTCCCTCCCCTTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATTATATGCAATTGATGGGGAAAAATGGCATGGTGATGGATTGGGCTGATCAAGTTGGTAATGACAACAAAAATGGTATGCTAAAGGAGGATGGAGATGAAAATAATCAAAAATTGTCACCAAACTATTATTACAATGGGAATATACAGACAATGCAGCCATGTAGTATTGATTTGCAGACTCTTCCTTCTCAGAACTCACAGTATGAAGTTGCTCTTACAGATCCACCACCCGGGTTTCAACTTAATGGACTCTATGGCACAAATATGGTACAATCTCAAATGTTCAACTACATGCAAGGAAGAGAGTAG 942 0.3747 MGRGRIPMELIQKEKARKTTFLKRKNGLMKKVYEFSTLCGVDVCVIIYGPNFDNQQLVEPETWPQDRREVYRIIQKYYDTTSDRRPKIYGVQEYYQDRMKKVEGEISKICKDKLKIIYPTWDDSFNPLGEEQLRIFVSLLDSKLDACSQRMNMLKGDHKGKAIAESDNMIMTLSPYLASNPSSYLNLMQNIAQAQFFPPLSQPSMLHFGQNYMQLMGKNGMVMDWADQVGNDNKNGMLKEDGDENNQKLSPNYYYNGNIQTMQPCSIDLQTLPSQNSQYEVALTDPPPGFQLNGLYGTNMVQSQMFNYMQGRE. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03347 313 CDD MADS 2 51 - -
Seca4g03347 313 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Seca4g03347 313 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g03347 313 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Seca4g03347 313 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03347 Seca-Chr4 57677734 57678675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03347 1 150 Type I MADS-box Gene Family AT5G55690 41.060 6.74e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g03347 SRF-TF 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03347 - - ccaj:109800518 358.221