Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03311 ATGAACAAAAGAGACAAGCCTCCAATTGAAGAGCTGCATCAATTTTTGGAGTTCCAGATTCCAAGACAATGGGCCCCTGTACCTGGTGAAACATCTAGTTTGAAGAATCAACTCAAGAGTGAGCTGCGATTGGGTATTTTAGGTCCTACACTTAAAATAAACACAATTCCAGTAGATGTTGGCAATAGACCAGTAACTGGCCTTAGATTACAATTGGAAGGGACAAGAAGCAACCGCTTGACCATTCACTTGCAGCATCTGGCTTCTCTACCTAATTATGTTTGCACTCCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGACCAAGCAGTTAGAGAAGGACTACGAACTTCTTAAAAGACAATATGAAGCTGTCAAGGCAGATAATGATGCACTTCAGCTCAGAACCAAAAACTTCAGACAGAGAGTCAGAAATGTTTCAGAAATGGCTATTAGTCCTGTGTCTATGGCTAAGCCTTCAGATTTGAAAAGTTCTGTGTCTATGGCTATTAGTTCTGTGTTTTTAATCAGAGTGCCCCACATGATCTCATAA 564 0.4113 MNKRDKPPIEELHQFLEFQIPRQWAPVPGETSSLKNQLKSELRLGILGPTLKINTIPVDVGNRPVTGLRLQLEGTRSNRLTIHLQHLASLPNYVCTPRQIAIWFQNRRARWTKQLEKDYELLKRQYEAVKADNDALQLRTKNFRQRVRNVSEMAISPVSMAKPSDLKSSVSMAISSVFLIRVPHMIS. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03311 187 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 4 99 IPR044663 GO:0006952|GO:0012501|GO:2000031
Seca4g03311 187 Pfam Homeodomain 96 111 IPR001356 GO:0003677
Seca4g03311 187 Pfam Homeobox associated leucine zipper 113 137 IPR003106 GO:0006355|GO:0043565
Seca4g03311 187 Coils Coil 112 139 - -
Seca4g03311 187 Gene3D - 77 119 - -
Seca4g03311 187 ProSiteProfiles 'Homeobox' domain profile. 96 114 IPR001356 GO:0003677
Seca4g03311 187 CDD homeodomain 96 114 IPR001356 GO:0003677
Seca4g03311 187 SUPERFAMILY Homeodomain-like 80 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03311 Seca-Chr4 57045659 57047858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03311 97 147 Homeobox Transcription Factor Family AT1G69780 63.462 1.51e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g03311 HALZ 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03311 - - mtr:11427087 129.028