Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g03310 | ATGGAAGAAGATCAAGAACTCAAACACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACATGAGGTCTCATGTCACCACCACCACCATTGTTTCAACAGAAACAGAGAAGTTTTCAACAACAACAACAAAGAAGGTTTCATACAATGGTGGAGACAACACAGGAATGGGTTCTGAAGGAGGAACTAATGCTGGGTATGGTCTGAGAGAGAATCCCAAGAAGACTTGGAGACTCACAGATTCAAGTGAAGACAACAATTTGGTGATGGACAAGTTCTGCAAAGAGTGTGGAAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGTCACTCTGAGAAAGAAAGAGTGTCTAATAATAACAGCTTGGATGATCAAGATTCATGGACTAACAATGCTAGCCAATCTGATACTGAAGCTACTGTTCCAAATCGAAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATGACCACCCCAGTAACTTCTTCTATGTCTTTTGTTGCTGCCAATCCTTCTTCCTCTGTTTCTGAGGCAGAGCAAGAGCTAGAGCAAGAAGAGGTTGCTATGAGCTTGATTATGCTTAGTAGAGATATGAGTCCATGGTGTGGTCTCAATTCTTTTGCTGCTGAATCCTCTGACAACAACTCATTGCAATTGGAAGCTCCATCTAAGATTGAAATGGTAAAAGTGGCTAAACCAAAGGACAATAAATTGGAATTTGGCAATTCTGTTTCCCCAAATCTCAATTCCAAAGGGAAAAGTTCAGAACTTTTGGCTAATGAGAGTCCTGGAAATGGATTCAGGATGCAGAAAAACAGAGTTTTCATCAAGAATGGGAAGCTTGAGATTGATTCTGAGTCAGCAGCATTTGAGGTCAATGAAACAGAATCAGTTCTATCAAAGTCAGATGTTAATAATAATAAGTACACTTCAATCAAGGCAAAGTTTTTGGATTCTGAATCCAAATCAAGTTCTTTGAAGAACAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAGGAATGAAAGCAGTGAGAACAGCATTGAATTGGAACCAGACCTCTCCCCTGACCCAACAACAATAGAAAGTAATAAGCTCATGAAGAACACTGACAACAATGAGTATATGGAGGAAGAGCATGAACTAGGTACTGGTTTTGATGATGGGGTAGACACAGCTAGAGAGTCCAAGAAGAGTAGCAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTCCCATCTGGGCAAGCCTTAGGTGGTCACAAGAGATCTCATTTGGCTAGTGAATCTGAGAGTAGACACTGTCAAAGTCAAACAGTGGTGCTTCAGGAAGCAGTTCCAGAAATAAGGAACTTCCTTGATCTTAACCTTCCAGCTGCTACAGATGAAGAAAGCAATAGTCATGCTGAGCCTTACAGACCTTGGTGGGTAGTAGGAAGCAACCACAAGCAAGAGGCACTGGTAGGCCTCATGTCTAACTGA | 1599 | 0.4196 | MEEDQELKHVCKFCSKSFPCGRSLGGHMRSHVTTTTIVSTETEKFSTTTTKKVSYNGGDNTGMGSEGGTNAGYGLRENPKKTWRLTDSSEDNNLVMDKFCKECGKGFHSWKALFGHMKCHSEKERVSNNNSLDDQDSWTNNASQSDTEATVPNRRRRSKRRRTRYMTTPVTSSMSFVAANPSSSVSEAEQELEQEEVAMSLIMLSRDMSPWCGLNSFAAESSDNNSLQLEAPSKIEMVKVAKPKDNKLEFGNSVSPNLNSKGKSSELLANESPGNGFRMQKNRVFIKNGKLEIDSESAAFEVNETESVLSKSDVNNNKYTSIKAKFLDSESKSSSLKNKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIELEPDLSPDPTTIESNKLMKNTDNNEYMEEEHELGTGFDDGVDTARESKKSSKGHECPICLKVFPSGQALGGHKRSHLASESESRHCQSQTVVLQEAVPEIRNFLDLNLPAATDEESNSHAEPYRPWWVVGSNHKQEALVGLMSN. | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g03310 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 349 | 369 | IPR013087 | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 383 | 402 | - | - | |
| Seca4g03310 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 442 | 469 | IPR013087 | - | |
| Seca4g03310 | 532 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Seca4g03310 | 532 | SMART | c2h2final6 | 98 | 120 | IPR013087 | - | |
| Seca4g03310 | 532 | SMART | c2h2final6 | 347 | 369 | IPR013087 | - | |
| Seca4g03310 | 532 | SMART | c2h2final6 | 442 | 464 | IPR013087 | - | |
| Seca4g03310 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 347 | 374 | IPR013087 | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
| Seca4g03310 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
| Seca4g03310 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 444 | 464 | IPR013087 | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 49 | 77 | - | - | |
| Seca4g03310 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 34 | IPR036236 | - | |
| Seca4g03310 | 532 | Pfam | C2H2-type zinc finger | 100 | 122 | - | - | |
| Seca4g03310 | 532 | Pfam | C2H2-type zinc finger | 347 | 371 | - | - | |
| Seca4g03310 | 532 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Seca4g03310 | 532 | Pfam | C2H2-type zinc finger | 442 | 466 | - | - | |
| Seca4g03310 | 532 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 515 | - | - | |
| Seca4g03310 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 98 | 125 | IPR013087 | - | |
| Seca4g03310 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 99 | 369 | IPR036236 | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 131 | 149 | - | - | |
| Seca4g03310 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 100 | 120 | IPR013087 | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 250 | 273 | - | - | |
| Seca4g03310 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Seca4g03310 | 532 | Gene3D | Classic Zinc Finger | 344 | 464 | - | - | |
| Seca4g03310 | 532 | MobiDBLite | consensus disorder prediction | 127 | 163 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g03310 | Seca-Chr4 | 57013196 | 57015780 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g03310 | 328 | 506 | C2H2 Transcription Factor Family | AT2G45120 | 38.333 | 8.08e-27 | 108 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Seca4g03310 | zf-C2H2_6 | 2.8e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g03310 | - | - | aprc:113852386 | 648.277 |