Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03309 ATGTACCCACAGCAACCGCAACAGCACCAGTACCAGCATCACGTTCCCTTCACCAACTTACAGCAACCGTTCTATCCCGCAAACCCATTCTTATTACCTTTCCCTCTCACCTCAGATTCTCCTCTTCATCCCCCAGGCACTGACCCACCTCCGAATTCAACCCCTTCTTCTGTTGCTGCCGCTGCTGCTTACGCTGCCCAAACAATTGATTCTCAGAACTGGATCGTCAAACAACCTGAGCTCATCAGATATGATCTTACTGCTGGTTCATCACATGAGACTTCATCAGTGTCCACAAGTTTGCCTTCGGCGTGGAATGGCACATGGTCACATCAAATTTTCACTAATGATACTACAGCTATGTTGCCTAACAAAACCAAAGTCACCATACCAATGAGATGTGAAGTTTGTAAAATTGATTGCAATAGCAAAGATGTTTATGAAAAGCACATATCGGGAAAGAAACACAGGAAAAATTTGCAGGTACAGACTAATCCCACCACTACATTATTACCAGGACCCTCTCATTCAAATGTACTGGGTCAGACGGCTAGTATCCAAGGACAAGCGTTAATCGGCGCTGTAGGCAATGGGGTAGAGTCTAAGAAACAGAAGGTTTTGAATGGCGGTGCACCCAATGACTCTGCAAAGGTTTGCACGGTATGCAACATTGTGTGCAACAGTCAAGACGTATATAACAAACATCTAGCTGGCAAAAGGCATGCTGCACAGGTTGGCCTGATGTCTAATAATGGGATCGGTCCACATATTGCTGAATTTAAGCGCCATGGTATTGGACCTTGGAAAAAGCCTCCAAAGAAAATCAAGGTGGCTCAATCTGCATGGTGTGAAGTTTGTAAGATCAATTGTAACAGCAGGGATGTGTATATTACACACTTAGCTGGGAAGAAACACCTGAAGAACTTGGAGAAACTGTCAAAACTGAAAATCGATGCCGGTTCCAATGCCACTGCAGCAAATCCAATGATCGGGCCACAGGAAAAGCCAGGTACTGATAAACCAAAACCACAGAAGGCACCAGAAATGGATATTGAGGCAAAGAAACTTAAAGTTGTAGAAGGAGGTGCTGCTGCAGATGCTGTTAAAATGTGCAGTCTATGCAATGTTGTCTGCAACAGCCAAACGGTTTTCAATGATCACCTTGCTGGGCATAAACATGCTGCTATGGTGAAAAAGCAGGCAGGGTCAAGCACTGCCATTTAA 1224 0.4469 MYPQQPQQHQYQHHVPFTNLQQPFYPANPFLLPFPLTSDSPLHPPGTDPPPNSTPSSVAAAAAYAAQTIDSQNWIVKQPELIRYDLTAGSSHETSSVSTSLPSAWNGTWSHQIFTNDTTAMLPNKTKVTIPMRCEVCKIDCNSKDVYEKHISGKKHRKNLQVQTNPTTTLLPGPSHSNVLGQTASIQGQALIGAVGNGVESKKQKVLNGGAPNDSAKVCTVCNIVCNSQDVYNKHLAGKRHAAQVGLMSNNGIGPHIAEFKRHGIGPWKKPPKKIKVAQSAWCEVCKINCNSRDVYITHLAGKKHLKNLEKLSKLKIDAGSNATAANPMIGPQEKPGTDKPKPQKAPEMDIEAKKLKVVEGGAAADAVKMCSLCNVVCNSQTVFNDHLAGHKHAAMVKKQAGSSTAI. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03309 407 Gene3D Classic Zinc Finger 117 163 - -
Seca4g03309 407 Gene3D Classic Zinc Finger 269 312 - -
Seca4g03309 407 Gene3D Classic Zinc Finger 347 401 - -
Seca4g03309 407 Gene3D Classic Zinc Finger 198 247 - -
Seca4g03309 407 SUPERFAMILY beta-beta-alpha zinc fingers 365 400 IPR036236 -
Seca4g03309 407 SUPERFAMILY beta-beta-alpha zinc fingers 278 312 IPR036236 -
Seca4g03309 407 SMART ZnF_U1_5 366 400 IPR003604 GO:0003676|GO:0008270
Seca4g03309 407 SMART ZnF_U1_5 278 312 IPR003604 GO:0003676|GO:0008270
Seca4g03309 407 SMART ZnF_U1_5 214 248 IPR003604 GO:0003676|GO:0008270
Seca4g03309 407 SMART ZnF_U1_5 129 163 IPR003604 GO:0003676|GO:0008270
Seca4g03309 407 SMART c2h2final6 369 391 IPR013087 -
Seca4g03309 407 SMART c2h2final6 281 305 IPR013087 -
Seca4g03309 407 SMART c2h2final6 132 156 IPR013087 -
Seca4g03309 407 SMART c2h2final6 217 241 IPR013087 -
Seca4g03309 407 Pfam Zinc-finger of C2H2 type 282 305 - -
Seca4g03309 407 Pfam Zinc-finger of C2H2 type 371 393 - -
Seca4g03309 407 Pfam Zinc-finger of C2H2 type 134 156 - -
Seca4g03309 407 Pfam Zinc-finger of C2H2 type 218 241 - -
Seca4g03309 407 SUPERFAMILY beta-beta-alpha zinc fingers 215 245 IPR036236 -
Seca4g03309 407 SUPERFAMILY beta-beta-alpha zinc fingers 116 162 IPR036236 -
Seca4g03309 407 MobiDBLite consensus disorder prediction 36 57 - -
Seca4g03309 407 PANTHER ZINC FINGER PROTEIN 385B-LIKE 133 247 - -
Seca4g03309 407 MobiDBLite consensus disorder prediction 38 52 - -
Seca4g03309 407 MobiDBLite consensus disorder prediction 323 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03309 Seca-Chr4 56990298 56996514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03309 208 397 C2H2 Transcription Factor Family AT5G61190 33.684 8.47e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03309 - - aprc:113848135 544.273