Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03303 ATGGAAATAACGGAAGAACAGAGAAAACGAGCCGAAGCAAACCGTGCAGCAGCCATCGCAAAACGGAAAGCCTTATTGGAATCCACCGCCGCTCAGCCCCAACCTCAAGGACACCCCTGGCACCTTTTCAAGTGCCAAAAGATCACCCACCCTCAACCCTTCCCTCCCAAACCCCAACCCCACAAGTTCCTCGCCAGGCTCGAAATTTGCTCCCCCGATTCCTTCTCCGTCACACCTCTCCCCCTTCCCGATTTCCCCTTCCCCGCCCCACACATTTGCTTCGACATTCTCAATTCCATTCTCTCCCACGTGGTGCCCTCGCACTTCACGCAGACCAGCGGGGGCGGAAATGCCTGTGTGTTCAAGCTTTCTGACTACAACGCCGTCCTCAAGCGGTTGAAGGCCGCGACGGATGTACAGGTGGAGGAGATTCCTTGGGGGACGTTCAATGTGGTCGAGAGGCTCTCCCATTCCTTCACGGCGGGGCGGTGGGCGCCGTTGAGGCCTGAGCACTTGAGTGACGAGGAGGTTGACCGCTTGATAGGGAAGCTTCCGAGGACTCTCCTTGATAGGTTGCTCCCTTTCCAAATGGATGGCTTGAGGTTTTCCCTCAGAAGGGGTGGCCGCTGCCTCATTGCTGATGACATGGGCCTTGGAAAAACACTACAGGCTATTGCTATTGCGGGATGTTTCTTGGATGAAGGGTCTATACTTGTTGTTTGCCCTGCTGTTTTGCGGTTTTCATGGGCGGAAGAATTGGAGCGTTGGCTTCCTTTCTGCTTGCCTGCTGATATCCACCTAGTTTTTGGCCATCAAGATAATCCGGTATATTTAACTAGATGCCCTAAAGTAGTGGTTATTTCTTATACCATGCTCCACCGTCTTAGGAAGAGCATGCTTGAACGTGAGTGGGCTCTTCTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAGCCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGACGTGGCTTCAAAAGTCGGGCGTATAATTTTGCTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATATTTCATCAGATAAATATGTTGTGGCCGGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGTGATTTGAAATATATTAAGGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTATTGAAGCAAACTGTTATGATAAGGCGTCTGAAAGAGCATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTGAAGAGATCAGATATAGTTGCTGCAAAAAACGCGGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCAAATGAAGATATGCCTTTGGAAAATTTGGATGAACATGATGGAAAGCTTTCTTATCAGGAACTTGGTATTGCAAAGATTTCTGGGTTTTGCGAATGGCTTTCCCTCCACCCACTCATTGCAGGATCAGAGAACGCTTCAAAGATGATAATTTTTGGTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGAATAAATTTTGTGCGGATTGATGGAAATACTCTTCCAAGAGATAGACAATCAGCCGTAGTCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATAATAGGTATTATGGCAGCAGGTTTTGGACTTGATTTCTCGACAGCACAATATGTTGTATTCTTGGAGCTACCTCAGTGCCCAACTGTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCCCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATGTACAACAGATGGAAAATATGATTCAATGAAAGAGATAGAGGTTGAAGGTGTCTCTTATTTAGACGTATCTTTGGAAACTGACAGTTATGAAGAGCAATCTGCATGCAACGATGCATCAAGGGGAACACAATTGGATAAGCAATCTTCTGCAGTAAATTCAAATGAATCAGAAGCAAATCAAAATGATAAATTTGATGAGTGGACTTCTTTCGTACATAACACAATTCAGGGTGATAATGTTATGATGGATAAGGTTGACTGCCTAGATTCAGGCAAGGCTTCAGTTTTGGATGGAAATCTTGATGTAGATGCTTTTGATGCTGAGGAGACATGTTCCGAAAAGAGTTTTGAAGACAAAGATAAAGTAATAGAGATAGCTTAG 2286 0.4479 MEITEEQRKRAEANRAAAIAKRKALLESTAAQPQPQGHPWHLFKCQKITHPQPFPPKPQPHKFLARLEICSPDSFSVTPLPLPDFPFPAPHICFDILNSILSHVVPSHFTQTSGGGNACVFKLSDYNAVLKRLKAATDVQVEEIPWGTFNVVERLSHSFTAGRWAPLRPEHLSDEEVDRLIGKLPRTLLDRLLPFQMDGLRFSLRRGGRCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKASEPGEIKAVLDVASKVGRIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDLKYIKGIQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKNAVGVLKIDASENANEDMPLENLDEHDGKLSYQELGIAKISGFCEWLSLHPLIAGSENASKMIIFGHHHKVLDGVQEFICEKGINFVRIDGNTLPRDRQSAVVSFRSSPEVKIAIIGIMAAGFGLDFSTAQYVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDSMKEIEVEGVSYLDVSLETDSYEEQSACNDASRGTQLDKQSSAVNSNESEANQNDKFDEWTSFVHNTIQGDNVMMDKVDCLDSGKASVLDGNLDVDAFDAEETCSEKSFEDKDKVIEIA. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03303 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 648 IPR001650 -
Seca4g03303 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 653 IPR027417 -
Seca4g03303 761 FunFam SNF2 DNA repair protein, putative 166 415 - -
Seca4g03303 761 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 688 - -
Seca4g03303 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 416 IPR027417 -
Seca4g03303 761 Gene3D - 170 409 IPR038718 -
Seca4g03303 761 Pfam Helicase conserved C-terminal domain 500 602 IPR001650 -
Seca4g03303 761 MobiDBLite consensus disorder prediction 670 698 - -
Seca4g03303 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 365 IPR014001 -
Seca4g03303 761 Coils Coil 1 23 - -
Seca4g03303 761 CDD SF2_C_SNF 503 613 - -
Seca4g03303 761 SMART helicmild6 519 602 IPR001650 -
Seca4g03303 761 Gene3D - 410 704 IPR027417 -
Seca4g03303 761 SMART ultradead3 188 384 IPR014001 -
Seca4g03303 761 Pfam SNF2-related domain 210 442 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03303 Seca-Chr4 56889106 56908558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03303 507 620 RAD5 or RAD16-like Gene Family AT1G11100 38.596 2.05e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g03303 SNF2_N 2.4e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03303 K25861 - gmx:100788690 1154.81