Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03301 ATGTCTATTTATGATGAGGTTGCAGAGCTTATATGGGAAAATGGCCAGCTATCTACACATGGGCTTGGTGGGCTTCATCAGGAAAAGCCCACATTGAACAGAGCCCGTGACACATTAGAGTCTATTGTTCAACAAGCCACATGCCACCATCAAAAGTCAAAACACATCATCATGGAAGACCATGCCCCTACAAGTATAAGCTTAAGCTCCATTGCTGCATCCTCCGGTGAGCAACACACGGTTCCAACGTTGTCAAGGAAGAGAGCATGGTCAAATTCCGGTTACAGTGTTAGGAGAAATAATGTTAGTACCGACACAAACATGGTAGAAGAATGTGGCCTCCCAAGTGGTTGTGCTAGTGCTGGTGCTGGTGCTAGTGCTACTCTTTGTAAGGACAATGATACAACCATGATGACATGGACTTCTCTTGAATCTGGGAGAAGCTTCAAGAATAAAACTCTTGAGGAACATTCCGCTTGTCGATGTGAATCGGATATTAGAGAAAATCAAGATGACTGCAGAGATAGCAAAGCAGAAACTGCAGGGCAAACCAATTCAAAAAGACGAAATAGAACTGCTGCTACCCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAAGTTGGTGCCTAATGCAAGTAAGACGGATAAAGCTTCAATGTTGGATGAGGTAATTAACTACTTAAAACAGCTTCAAGCACAGATCCAAATGATGAATATGACAAGCATGCCACAGATGATGGTGCCTTTAGCTATGCAACAACAGCTTCAGATGTCTATGTTAGCCAGAATGAATGGTGGTCTTGGCATGGGAATGGGAATGGGAATGGTTAACATGGCTGCACAAACAGGTGCTCCAAGGTCATTCCCACAACTCATTCAATCAACAACAGTTGGAGCTGTCACTGCCCCAATATTTGTCCCCCCAACCTTTATGATGCCTTCTTTGGTTCAAGCACGTGCCCCTGCATCTCCAAAGCCTGAACCTGCATCTTCAGGCACTAATCCATACAGCACTAGTCTCACACAATCAGTGAATATGGATATCCTCAACAGCATGGCAGCACTTTATCGGCAACAGATGAGTCAGAACGATCACGCATTGAGCAGCAACAAAGTCCCAAATACGCCATCATTGAGAAACAAACAAATGTGA 1182 0.4399 MSIYDEVAELIWENGQLSTHGLGGLHQEKPTLNRARDTLESIVQQATCHHQKSKHIIMEDHAPTSISLSSIAASSGEQHTVPTLSRKRAWSNSGYSVRRNNVSTDTNMVEECGLPSGCASAGAGASATLCKDNDTTMMTWTSLESGRSFKNKTLEEHSACRCESDIRENQDDCRDSKAETAGQTNSKRRNRTAATHNQSERKRRDRINQKMKALQKLVPNASKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMNGGLGMGMGMGMVNMAAQTGAPRSFPQLIQSTTVGAVTAPIFVPPTFMMPSLVQARAPASPKPEPASSGTNPYSTSLTQSVNMDILNSMAALYRQQMSQNDHALSSNKVPNTPSLRNKQM. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03301 393 MobiDBLite consensus disorder prediction 373 393 - -
Seca4g03301 393 MobiDBLite consensus disorder prediction 164 184 - -
Seca4g03301 393 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 7 376 IPR031066 -
Seca4g03301 393 Gene3D - 185 251 IPR036638 GO:0046983
Seca4g03301 393 MobiDBLite consensus disorder prediction 164 207 - -
Seca4g03301 393 MobiDBLite consensus disorder prediction 193 207 - -
Seca4g03301 393 Pfam Helix-loop-helix DNA-binding domain 194 241 IPR011598 GO:0046983
Seca4g03301 393 SMART finulus 197 246 IPR011598 GO:0046983
Seca4g03301 393 CDD bHLH_AtPIF_like 191 253 IPR047265 -
Seca4g03301 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Seca4g03301 393 MobiDBLite consensus disorder prediction 327 349 - -
Seca4g03301 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 251 IPR036638 GO:0046983
Seca4g03301 393 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03301 Seca-Chr4 56863590 56868949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03301 6 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.474 2.93e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03301 HLH 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03301 - - gmx:102667566 377.096