Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03295 ATGGATGTTAGCGGTAAGAAGGAGGAAAATACAATGCCAGTGGAGCTAGCAATCCAGAGGGAGCTGGCATATAGGAGGAAGGTAGCAAATGATGATTCCACTGAAGAGTGTCTTCCATTGCAGCAGTTAATGCTTACCAGCATTTGGTTCTCTTATAATACTCTCTTATGGGCCACACTTCCTTTGTGTCAATCTATATTTATTTTTCAGGTTAAATCATCAAACCAAGCTTCCCACCCAATGCCATTGTCAAGTCCAAGTTTATGCCAATTTTCAAGTTCAAACCTTTCAGGAACTAAGAGAAAGGAATTACCAACAAGCAGTGCTCATCATCCTCCTTTGCAACATCAACAACCATTTCATGGCAGTCTCAATCACAAAGCTAACACAGTTAATTTAAACTGTGAAATCTGTCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAACATTTAATCGGTCACAAGCACTGTAAAAAATTGCAAAAGCTGGAGTTCAGTGAGAAAACTGGAATAGAGGGCAGAAGCAATCACAGGCAATGGTGTGAACTGTGTCAAGTTTCATGTATGAGTGAAGACTTGCTCAATTTGCACTTTCAAGGTCATAAGCACAAAGTTAATCTGCAGAACTTGGAAATTAGTAAGCAAGGTGGGGAGGCTCCATATAAACAAAAATGGTGTGAACTATGCAAATTGTGGTGCATTAATGAGTTTTCCTTCAAGCAGCATCTTGAAGGTAAAAAGCACATCATTCAGCTGCATGCTATGGAGAAAGCCATAAAAGAGAAGAATGAAATGACATTGTGA 807 0.3941 MDVSGKKEENTMPVELAIQRELAYRRKVANDDSTEECLPLQQLMLTSIWFSYNTLLWATLPLCQSIFIFQVKSSNQASHPMPLSSPSLCQFSSSNLSGTKRKELPTSSAHHPPLQHQQPFHGSLNHKANTVNLNCEICQVSCSSPFNLKQHLIGHKHCKKLQKLEFSEKTGIEGRSNHRQWCELCQVSCMSEDLLNLHFQGHKHKVNLQNLEISKQGGEAPYKQKWCELCKLWCINEFSFKQHLEGKKHIIQLHAMEKAIKEKNEMTL. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03295 268 Gene3D Classic Zinc Finger 123 173 - -
Seca4g03295 268 Gene3D Classic Zinc Finger 174 217 - -
Seca4g03295 268 Gene3D Classic Zinc Finger 218 260 - -
Seca4g03295 268 Pfam Zinc-finger of C2H2 type 181 204 - -
Seca4g03295 268 Pfam Zinc-finger of C2H2 type 226 249 - -
Seca4g03295 268 Pfam Zinc-finger of C2H2 type 134 157 - -
Seca4g03295 268 SMART c2h2final6 225 249 IPR013087 -
Seca4g03295 268 SMART c2h2final6 133 155 IPR013087 -
Seca4g03295 268 SMART c2h2final6 180 202 IPR013087 -
Seca4g03295 268 ProSitePatterns Zinc finger C2H2 type domain signature. 135 157 IPR013087 -
Seca4g03295 268 SUPERFAMILY beta-beta-alpha zinc fingers 130 164 IPR036236 -
Seca4g03295 268 PANTHER OS06G0651300 PROTEIN-RELATED 94 171 - -
Seca4g03295 268 SMART ZnF_U1_5 130 164 IPR003604 GO:0003676|GO:0008270
Seca4g03295 268 SMART ZnF_U1_5 177 211 IPR003604 GO:0003676|GO:0008270
Seca4g03295 268 SMART ZnF_U1_5 222 256 IPR003604 GO:0003676|GO:0008270
Seca4g03295 268 SUPERFAMILY beta-beta-alpha zinc fingers 173 212 IPR036236 -
Seca4g03295 268 SUPERFAMILY beta-beta-alpha zinc fingers 213 255 IPR036236 -
Seca4g03295 268 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03295 Seca-Chr4 56772403 56773602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03295 48 265 C2H2 Transcription Factor Family AT5G61190 23.741 5.01e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g03295 zf-met 4.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03295 - - lang:109356456 242.662