Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03294 ATGGGGCTTCCTGTTAGTCTGTTTCTTGATCCTTTTCTCAGGCAATTATTGATTTGTGCTGATTCTACAGGTAAATTTATTGCTGGGGATTCATTGGATACTGACAAACAAGTTCTGCTGAGGCTGAAATCATACTTGGAAAATCAAACGGTTGCAAATAAAGGAGGATATATAAACTGGAACAAGAACAGCTCAAATCCTTGTGAATGGTCAGGAATATCTTGCAGTCTCTTCAACGGGACAACATGGAGGGTTGTGAGTGTAGACATCTCTGCTAGTGAGATAGCTGGTAAGATATTCCAGAATTTCTCTCTTCTCACAGAGCTCACACACCTTGATGTCTCTTGGAATACACTTTCTGGGGAGATTCCTGAGGATTTGAGGAAGTGTCAGAAGCTTCAGTATCTCAATATCTCCCGTAATATTCTTGAGGGGGAGCTGAATTTGACTGGCTTGACACGTTTGCAAACACTGGATTTGTCTGTTAATAGATTTCATGGTGATCTTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTTTGAATATTTCAGATAATTACTTTACTGGGAGGATTGATAGCTGCTTTGATCAATGCCTGAGATTGCAGAACTTGGATTTGAGCACCAACAATCTGAGTGGGGGCTTATGGACTGGAATTTCAAGGCTGAGAGAGTTTTCAGTTTCAGAGAACAACCTCAGTGGGATTGTTCCTTCCCATGTTTTTCCAGGGAATTGTAGCCTCAAAAAACTGGATCTTTCAGTAAATGGGTTTGTTGGTAAACCCCCCAAGGAGGTTGCTAATTGCAAGAATTTAGAGATTCTCAATCTTTCTAGTAATAATTTTACTGGAGATATTCCCAAAGAAATTGGTTTCATTTCAGGTCTTCAATCATTGTTCTTGCAGAACAATAGTTTTTCAAGAGATATTCCAGAGACCCTTTTGAATTTGTCCAACTTGTTTATCTTGGATTTGAGCAGAAACCGGTTTGGTGGGGAGATACAGGAGATTTTTGGGAAATTCAAGCAAGTGAAGTTTCTTCTGCTGCACTCAAATTCTTACACTGGAGGATTGAATACATCAGGCATTTTTACATTGACAAACCTTAGCAGGTTAGAGCTAAGCTTCAATAACTTCTCAGGTCCATTACCTGCTGAAATTTCTCAAATGTCTGGTCTCACTTTCCTATCATTATCCTCAAACCAGTTCACTGGACCTATTCCATCTGAATTGGGAAAATTGACTCACCTGCTAGGACTCGATCTTTCCTCCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCCCTCTTGTGGTTAATGCTTGCACATAATTCATTAACTGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCTTGTTATGGTTGAACCTTGCAAACAACAAACTCTCTGGAAAATTTCCTTCTGAATTAACAAAAATTGGAAGAAATGCATTGGCCACATTTGATTCAAATAAAAGAAGTATTGGCAGAGTTGTTGCTGGCAATAGTGAATGCTTATCAATGAGGAATTGGATACCTGCTGATTACCGTCCATTCAGCTTTGTGTATACCATTCTAACAAGGAAGAATTGTAGAGCCCTTTGGGACAGATTGCTCAAAGGATATGGTATTTTCCCTATGTGCACATCTGAGTCCTCTTCTAGATCATTACATTCAGCCGGGTATGTTCAGTTAAGTGGGAACCAGCTAACTGGTGAAATTCCTCCAGAAATTGGGACCATGCTGAACTTCAGTATGTTGCATTTGGGGGATAACAAATTCTCTGGGAAATTCCCTCCAGAAATGGTGAGTATGCCACTTGTAGTCTTGAACATCACCAGAAACAAGTTTTCAGGTGAAATTCCAAAGGGAATTGGCAACATGAAGTGTCTGCAGAATCTTGATTTGTCTTGGAACAATTTCTCAGGGCAATTTCCCACAAGTTTGGTTAACTTGGATGAGCTTAGCCATTTCAACATCTCATACAATCCTTTCATATCTGGTGCAGTTCCACCAGAAGGACACTTACTCACTTTTGACAAAGATTCATATTTGGGTGACCCTCTCCTAGACCTCCCAGAGTTCTTCAATAACATCACAGATGGAAGAAATAGGACCTTTCACAGGAGCCTGAAAAAATCCACAAAATGGTCTCTGTGTGTGGCCCTAACACTGTCTGTCTTGGTCTTTGGACTTCTTTTTCTAACAGTCTATTTCTTGTTAAAAGGTCCATCTGTGGAATCAGGATACCTCCTTAGGGATAAAAACCAGGGGCATGATTCAAGTAGCTCTGGATCCTCACCATGGTTGTCTGATACTGTTAAGATATTCCACTTGAACAACACAGTCTTCACACATGCTGACATCTTGGAAGCAACTGGAAACTTCACAGAAGATAGAGTCATAGGAAAGGGTGGATTTGGAACAGTGTATAGGGGAGTGTTTCCAGATGGGAGAGAAGTGGCTGTGAAGAAGCTTCAAAGGGAAGGAATAGAGGGTGAGAAAGAATTCAAAGCTGAAATGAAGGTTCTGAGTGGTCATGAATTTGGTTGGCCTCATCCAAACCTTGTCACTCTCTATGGGTGGTGCCTGCATGGTTCACAGAAGATACTGGTTTATGAGTACATAGGAGGTGGAAGCTTAGAGGATCTTGTGACTGATACAACAAAGTTAACATGGAGGAGGCGCCTAGAAGTAGCAATTGATGTGGCTAGGGCATTAGTCTATTTACACCATGAATGCTACCCTTCTATTGTACACAGAGATGTGAAGGCTAGTAATGTGTTGCTAGACAAGGATGGGAAGGCCAAAGTCACAGACTTTGGACTTGCTAGAGTTGTTAATGCTGGAGATAGTCATGTGAGTACAATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAGACATGGCAAGCTACCACAAAAGGGGATGTGTACAGTTTTGGGGTATTGGCTATGGAGTTAGCAACAGGGAGGAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGTTAGGCGTGTCACAGGTTGTGGAAGACATGGATTGAGTTACTCTGTGCCTGTTTTGTTGATGGGCTCTGGACTAGTTGGGGGTGCAAAAGAAATGGGTAAGCTGCTACAAGTTGGGGTGAAGTGCACAGATGATACACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGTTGATTAAGATATACAATCCCATTAGAGACTCAAATTATGGGCATCTTGTTTAG 3279 0.4178 MGLPVSLFLDPFLRQLLICADSTGKFIAGDSLDTDKQVLLRLKSYLENQTVANKGGYINWNKNSSNPCEWSGISCSLFNGTTWRVVSVDISASEIAGKIFQNFSLLTELTHLDVSWNTLSGEIPEDLRKCQKLQYLNISRNILEGELNLTGLTRLQTLDLSVNRFHGDLGLNFPAICDNLVTLNISDNYFTGRIDSCFDQCLRLQNLDLSTNNLSGGLWTGISRLREFSVSENNLSGIVPSHVFPGNCSLKKLDLSVNGFVGKPPKEVANCKNLEILNLSSNNFTGDIPKEIGFISGLQSLFLQNNSFSRDIPETLLNLSNLFILDLSRNRFGGEIQEIFGKFKQVKFLLLHSNSYTGGLNTSGIFTLTNLSRLELSFNNFSGPLPAEISQMSGLTFLSLSSNQFTGPIPSELGKLTHLLGLDLSSNSFSGPIPPSLGNLSSLLWLMLAHNSLTGEIPPELGNCSSLLWLNLANNKLSGKFPSELTKIGRNALATFDSNKRSIGRVVAGNSECLSMRNWIPADYRPFSFVYTILTRKNCRALWDRLLKGYGIFPMCTSESSSRSLHSAGYVQLSGNQLTGEIPPEIGTMLNFSMLHLGDNKFSGKFPPEMVSMPLVVLNITRNKFSGEIPKGIGNMKCLQNLDLSWNNFSGQFPTSLVNLDELSHFNISYNPFISGAVPPEGHLLTFDKDSYLGDPLLDLPEFFNNITDGRNRTFHRSLKKSTKWSLCVALTLSVLVFGLLFLTVYFLLKGPSVESGYLLRDKNQGHDSSSSGSSPWLSDTVKIFHLNNTVFTHADILEATGNFTEDRVIGKGGFGTVYRGVFPDGREVAVKKLQREGIEGEKEFKAEMKVLSGHEFGWPHPNLVTLYGWCLHGSQKILVYEYIGGGSLEDLVTDTTKLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVNAGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWVRRVTGCGRHGLSYSVPVLLMGSGLVGGAKEMGKLLQVGVKCTDDTPQARPNMKEVLAMLIKIYNPIRDSNYGHLV. 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 247 345 IPR032675 -
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 149 246 IPR032675 -
Seca4g03294 1092 SUPERFAMILY L domain-like 564 684 - -
Seca4g03294 1092 SMART serkin_6 804 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03294 1092 ProSitePatterns Protein kinases ATP-binding region signature. 810 833 IPR017441 GO:0005524
Seca4g03294 1092 Pfam Protein kinase domain 804 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03294 1092 SUPERFAMILY Protein kinase-like (PK-like) 785 1077 IPR011009 -
Seca4g03294 1092 Gene3D Phosphorylase Kinase; domain 1 770 883 - -
Seca4g03294 1092 SMART LRR_typ_2 222 246 IPR003591 -
Seca4g03294 1092 SMART LRR_typ_2 295 319 IPR003591 -
Seca4g03294 1092 SMART LRR_typ_2 440 464 IPR003591 -
Seca4g03294 1092 SMART LRR_typ_2 368 392 IPR003591 -
Seca4g03294 1092 SMART LRR_typ_2 106 130 IPR003591 -
Seca4g03294 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Seca4g03294 1092 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 884 1084 - -
Seca4g03294 1092 CDD STKc_IRAK 810 1079 - -
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 415 507 IPR032675 -
Seca4g03294 1092 ProSiteProfiles Protein kinase domain profile. 804 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03294 1092 Pfam Leucine Rich Repeat 179 201 IPR001611 GO:0005515
Seca4g03294 1092 Pfam Leucine Rich Repeat 273 292 IPR001611 GO:0005515
Seca4g03294 1092 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Seca4g03294 1092 Gene3D Transferase(Phosphotransferase) domain 1 885 1088 - -
Seca4g03294 1092 Pfam Leucine Rich repeat 109 122 IPR001611 GO:0005515
Seca4g03294 1092 SUPERFAMILY L domain-like 223 484 - -
Seca4g03294 1092 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 30 1076 - -
Seca4g03294 1092 FunFam Putative LRR receptor-like serine/threonine-protein kinase 343 504 - -
Seca4g03294 1092 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 241 336 - -
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 33 148 IPR032675 -
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 346 414 IPR032675 -
Seca4g03294 1092 FunFam Leucine-rich repeat receptor protein kinase MSP1 767 883 - -
Seca4g03294 1092 SUPERFAMILY RNI-like 71 289 - -
Seca4g03294 1092 Gene3D Ribonuclease Inhibitor 551 711 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03294 Seca-Chr4 56767157 56771087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03294 59 1079 Receptor kinase-like Gene Family AT4G39400 32.584 1.31e-144 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Seca4g03294 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03294 - - gmx:100813425 1689.47