Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03293 ATGTCGGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCCGGGGCTTCCAAAACCTATCCTCAACAAGCCGGCACCATTCGCAAGAACGGTTACATCGTCATCAAGGGTCGCCCCTGCAAGGTTGTTGAGGTTTCAACCTCTAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACTGCCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCACATGTGAATCGTACTGACTACCAGTTGATTGATATTTCTGAGGATGGATTTGTGAGCCTGCTCACTGAAAATGGGAACACCAAGGATGACCTGAGGCTCCCTACTGATGAGAGTCTTCTTACTCAGATAAAGGATGGATTTGCTGAGGGTAAGGACCTTGTTGTGAGTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTGAAGGATATTGGGCCAAAGAATTAG 483 0.4783 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03293 160 Gene3D - 86 159 IPR012340 -
Seca4g03293 160 CDD S1_eIF5A 86 156 - -
Seca4g03293 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca4g03293 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca4g03293 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca4g03293 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca4g03293 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Seca4g03293 160 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g03293 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca4g03293 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Seca4g03293 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Seca4g03293 160 Gene3D - 1 85 IPR014722 -
Seca4g03293 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca4g03293 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03293 Seca-Chr4 56716884 56719041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03293 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 3.00e-104 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03293 K03263 K02180 gmx:100499632 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03293 4 56716884 56719041 Seca4g03293 4 56716884 56719041 ECH