LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g03292	ATGGGCTGTGTGAGTTCCAAACAGGCGGTGTCGGTCACGCCCGCGATCGACCACTCAGGCGCGTTTGGAAGAAAAACGGTTATCGACTCGGATAATAATAAGAAGAGGAGTGAGTCAGGGAGAGCGAGTCAGAGCGAGGTCGGCGAGTCAGGGAGAGCGAGTTCAAACGGTTGCGACTCCTTAAGTTTCAGGTTGGGGAACCTCCACAAATACGTGCAAGGTGAACACGTGGCAGCTGGATGGCCGGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTTCCGCTTCGTGCCGATGCCTTTGAAAAACTCGAAAAGATTGGGCAGGGGACGTATAGCAGTGTGTTTCGGGCTAGAGAGCTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTCGATAATTTCGAACCGGAGAGTGTGAGGTTCATGGCAAGGGAAATAATGATTCTGAGGAGACTCGATCATCCAAATATCATAAAATTGGAAGGGTTAATTACTTCCAGATTATCGTGTAGCATATACCTTGTGTTCGAGTACATGGAGCATGACATTACAGGGCTTTTGTCCTCCCCTGATATCAAGTTCAGTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGTCTTGAGCATTGTCACTCGCGGGGAGTGATGCACAGGGACATTAAGGGATCGAATCTTCTGGTGAATAATGAAGGGGTTTTGAAGGTGGCGGATTTTGGATTGGCGAATTTCATCAGTGCTGGGCATAGGCAGCCCCTCACTAGTCGTGTTGTCACGTTGTGGTATCGTCCACCGGAGCTTTTACTCGGTTCGACAGATTATGGTCCTTCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAGCTACTTGTTGGGAAACCTATACTTCAGGGGAGAACAGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCCCATGCGACTTTGTTTAAGCCACAGCAGCCATATGATAGCTGCCTCCGAGAGTCCTTTAGAGATTTGCCTCCTGCTAGTGTAAATCTACTACAAACTTTTCTTTCTGTCGAACCGTACAAACGTGGGACTGCCGCATCTGCTCTCTCATCTGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATTGATGCAAAACACAGGGAGGAGTCCAGTTTCAGGAAAAAGACTGGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCAAGAAAGCCACTAGGATTCAGTAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACCCAGACCTCCCAAAAGGTCAACGGTAGATCATCCCGCGTCCTTAAAGAAGAAAAGGCTAATATAGGTGAGGAGGCACAAAAGCCATCCAGTGATAAACCTGAAGATGCTTCCCATATGAAGAATGCGTCTCAGGGAGATATTCCCTTTTCTGGACCATTACAAGTTTCAACATCAAGCGGCTTTGCATGGGCAAAAAGCCGTAGAGATGAGACTTCAATTCGATCCCATTGTCGAACTATTTCTCGAGGACATATTTTCAATCCTTTAGAACCTTCTAAATTAAATTCAAGGAATAATTCAGACACCATAAACCAGGAAAATAAGGAGTTTTGTGGAAGACACACCAACTCTAGGGGCCATGATCTACTTGAAATTTCTAAGCTTTCAATGCAGAATCAGTGGAGCAAGTTTGATCGCCCTGATTCATTTGATGCTTCTGATGAGTACCACTCGCAAGAACTCTCTATGGCACTTTATCATAGAGAAGATTCAGTATCCAAGAGAAGTAACATAAGTTTTCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGACCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGGCATGAACGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGCATGGGAAGTAA	2031	0.4623	MGCVSSKQAVSVTPAIDHSGAFGRKTVIDSDNNKKRSESGRASQSEVGESGRASSNGCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFISAGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRESFRDLPPASVNLLQTFLSVEPYKRGTAASALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESSFRKKTGGRVRGTETRKPSRKPLGFSKLAPAEDLASQTQTSQKVNGRSSRVLKEEKANIGEEAQKPSSDKPEDASHMKNASQGDIPFSGPLQVSTSSGFAWAKSRRDETSIRSHCRTISRGHIFNPLEPSKLNSRNNSDTINQENKEFCGRHTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSVSKRSNISFQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKHGK.	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g03292	676	PANTHER	CELL DIVISION PROTEIN KINASE	102	392	-	-
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	23	55	-	-
	Seca4g03292	676	ProSiteProfiles	Protein kinase domain profile.	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g03292	676	SUPERFAMILY	Protein kinase-like (PK-like)	97	395	IPR011009	-
	Seca4g03292	676	SMART	serkin_6	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g03292	676	FunFam	probable serine/threonine-protein kinase At1g54610	187	428	-	-
	Seca4g03292	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	449	464	-	-
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	28	42	-	-
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	407	438	-	-
	Seca4g03292	676	Gene3D	Phosphorylase Kinase; domain 1	91	186	-	-
	Seca4g03292	676	CDD	STKc_CDK9_like	104	388	-	-
	Seca4g03292	676	Gene3D	Transferase(Phosphotransferase) domain 1	187	426	-	-
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	465	494	-	-
	Seca4g03292	676	ProSitePatterns	Protein kinases ATP-binding region signature.	110	133	IPR017441	GO:0005524
	Seca4g03292	676	MobiDBLite	consensus disorder prediction	404	508	-	-
	Seca4g03292	676	FunFam	probable serine/threonine-protein kinase At1g54610	91	186	-	-
	Seca4g03292	676	Pfam	Protein kinase domain	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g03292	Seca-Chr4	56650573	56656059	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g03292	96	449	Core Cell Cycle Gene Families	AT5G10270	48.919	1.72e-114	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca4g03292		Pkinase	9.2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g03292	-		-	gmx:100803328	1214.52