Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03288 ATGGCGCTGTTCCGAAGGTTCTTCTACCGGAAGCCGCCGGATCGCCTTCTCGAGATCTCTGAGAGAGTCTATGTTTTTGATTGTTGCTTCTCCTCGGATGTCTTGGATGAAGATGAGTACAAAGTTTATATTGGGGGCATTGTAACTCAGCTACAAGATCACTTTCCAGATGCTTCTTTCATGGTATTCAATTTCAGAGAAGGGGATAGGCGCAGCCAAGTTTCAGACATACTGTCTCAGTACGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCACTTCTGCCTTTGGAGATGATTCATCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGGGGGGGTTGGCCCGTGCTGGCATTTATGCTAGCTGGTCTTTTATTGTACCGGAAACAATACACTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAACAAGCGCCCAGAGAACTTCTCCACCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTTAAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCAGAAACACCCTTATATTTGGATTGTCTGATTCTTGGAGTCCTTCCTTTATATGATGATGGAAAAGGATGCAGGCCTGTTGTACGTGTTTATGGTCCGGACCCTTCAAAACCTGTCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAAACCCAAAAACATGTTCGCCACTACCAACAGGCAGAATGTATGCTCGTGAAAATTGATATCCATTGCCGTGTTCAAGGGGATGTCGTTCTTGAATGCATACATTTAAGTGAAGATTTGGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCATTCGTACGGTCAAATATTTTGTTGCTGAGCCGTGATGAAATCGATATTTTGTGGGATGCAAAGGATCAGTTTTCCAAGGATTTTAAATCTGAGGTGCTCTTTTTGGACCCTGATGCTGTTATACCCAACCTAGCCACCGTCATTGTAAGTGGAGATGCAAATGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGCGGAAGAGATCTTCAGCAATGTAATTGATACACAGGAAGGTAAGGGGGATTATGATTCTACAATGGTTCATGACAATGCAGTAGATGATGGAAGTCATAAAGAGGTCTGGAAAGAGTATTCAGATCCTAATACTTTTCAGGATTCCACGCCAGATGATGGGATTCACCAACAGGTGGGAAGGACAGACTGTGGTATTAATGCAGTAAAAGACATTACTGTTGATGATGTGAAGTACAAGCTCAATGAGAGTGTGGATTCAGATAATCATGAAGTCAAAGATATTGTTGTGGATGATGGAGAAAATAAGTTAACTCCCACTGCAGACACTTCTGATGTGATGAAAACCCAGGAGACAAAGGAAGTCACTATGGATGTGCATGATGAGTTGGCAGCTATGCAAAACATGTATGATGAAGATAACAATGCAGCACAGGAAGAATTCGAGTCTGAGGAAGGGGAGCTGGTGCATGATCTTTCCATATCAAAATCTGATAACCTACTACCATCTGCTGAAAAGAAACAACATCCTTCAAACTCAAAGCCAATGGGGGATACAGTTGCAGCAAAGCAAAAAACTAAACACCAAGAACCACATGGTTTTCAAGCAAAACTAGCAAAACCAAATGCAACAACTAGGTGGATACCTTCTAACAAGGGTTCTTATCAAGATTCAATGCATGTCTCATATCCACCAACAAGGCATAATGATTCACCAACTGCTCTGTCAAATGCTACCTCTGCAAAGGAGAAAATGACCGATGTCAAAGGAATACATGACTTAAATTGTAACGGGGACAATTCAACATCTTCAGACAGCATGACAGAAACAGACTCAAACTCGCCACGATCATCATTACTATCTGTTAATGACACATCTCTTCAGTCAGCTACCCAAGCACCACAACTGAGCTCCAATCAAGTGCTACAACCTTCTCCTCCCCCTCCCCCTCCACCTCCACCCCCACCCAAATGGCCTTCTTCTTCCTTGGATGGTAAGGTATCTACAATACCACAACCACCGCCACCACCTTCTTTGACATTATTTAGCAAGCAAAACAAAGGGATGAACTTACAAGCTGCGATTGCTCCACTTCCTCCTCCCCCTCCACCTCCATTCATTGGGAAAAATAAAGGTAGCAACTTACCTCCTACCTATTGGAAGTCTGTTTATTCATCAATTGCTGTAGTTGGAGAGAAAAGTGGTGCTTTACCTCCTACTTTAGATCCTCCTATTGCAAGAAGTGCAATTACGGCAAAAGTTTCCGAATCACTCGGTCTAGTTTCCCTTGCATGTCCTCCTCCTCCTCCTCCTCCTCTAAAGTATGTAGTTACATCCATTCCTCCTCCTCCGCCACCTCCCCCTATATCTTCTACAGATAGAGCTCCACTCCTTTCTCCCTCAACACCCCCAACATCACTTAAAGCTCCACTTCCTCCACCTCCACCACCACCGCCACCCCCTCCTCCTTTATGTAGAGTTCCATCACCATCACCACCACCACCATCTCCACAACCTATAAGTAAATCTCCACCACCACCGCCGCCGCCGCCTCCTCCTCCTCCTTTATGTAGAGCTCCACCACCACCTCCACCTCTTTTTAGTAGCGCTTCGGCACCACCACCTCCACCTCCACCTCCATCTCCACCTCCTTTTAGTACAGCTCTGTCACCATCACCATCACCATCACCTCCACCTCCACCTCCTTTTAGTAGAGCTTCACTACCACCACCACCTCCACCTCCTTTTAGTACAGTTCCATCACCGCCTACTCCACCTTCTTTTAGTATAGTTCCATTACCATCACCTCCACCTCCTTTTAGTAGAGCTCTACCACCATCACCTCCACCTCCACCGCCTCCACCTCCCTTTAGTACAACTCCATTACCACCACTTCTACCTCCTTTTAATAAAGCTCCACCACCACCACCACCACGACCTCCCTTTAGTACAGCTCCATTACCACCTCCTCCACCACCACTTCTTCCTCCATCAAGTGGAGCACCACCTCCACCACCACCACCTCATCCTCCATCAAGTGGAGCATCGCCACCACCACCTCCAACTCCAACTCCTCTTCTTCCATCAAGTGGAGCACCACCTCCACCACCACCACCACCTTTTCCTCCATCAAGTGGAGCTCCACCACCACCACCTATTCCTACACTAAGTGGAGCACCACCTCCACCACCTCTTCCTATATCAAGTGGAGCACCACCACCACCACCACCACCTATTCCTACATCAAGTGGAGCATTACCACCTCTTCCTATATCAAGTGGAGCTCCACCACCACCACCACCACCACCATTTATTCCTATTATTCCTACATCAAGTGGAGCACCACCTCCACCACCACCTCCACCTTTTCTTCCATCAAGTGGAGCTCCACCTCCACCACCACTTCCTTCAATGTCTAGAGCCCCACCTCCCCCACCTCCCCCATCTCGTGGACCCCCGCCACCACCACCTCCAATGTATGGAGCACCCCCGCCACCACCACCTCCAATGCGCGGAGCTCCACCTCCACCTCCACCGGCTCCAGGGTGTGGAGCACCGCCTCCTCCACCACCTCCAGGTGGCAGAGGCCCACCTCCACCACCTCCTCCTGGAGCTCGTCCTCCCGGTGCTCCTGCTCCTCCTGGACCTCCAGGTGGTGGACCTCCACCTCCTCCTCCCTTAGGTTCCAAAGGTGCAGTTGGAGCCGATCCAAGAGGGAGAGGGCGTGGACTTGCACGCCTTCCAGGTGCTGGTGCAGCGGCAACTAGACGATCCTCCTTAAAGCCTTTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAACCTCAAATTGCACAAGAGTTTGACGTTTCAGAATTAGAGAAGCTCTTTTCTGCAAATGTTCCAAAACCTGCTGATTCTGGTGGTAAATCTGGAGGGCAGCGCAAATCTGCTGGATCCAAAACTGACAAAGTCCACTTGATTGACCTAAGGAGAGCCAATAATACTGAAATTATGCTTACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTATTGGCTATGGATGAGTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAGGAGAAATTGGGAAAGTGCGAACAGTATTTTTTGGAGCAGATGAAAGTGCCACGAGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAGATTCAGTTTGGGACTCAGATTACAGAGTTCAAGAAGAGTTTAAACACGGTGAACTCTGCCTGTGATGAGGTCCGAAATTCGCTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGCAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTTAAGTTGGATAGTCTTTTAAAGCTCACTGACACCCGTGCTTCAAACAGTAAAATGACTCTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGTCTCCTGCACTCCTTGACTTTCACCTTGACCTTGTTAGCCTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAGGCAATCATTAAGGGATTAGAAAAGGTTAAACAGGAGTTTGCTGCATCTGAAAATGATGGTCCCGTGTCCGAAGTTTTTCATAAGACATTGAAAGAATTCATTGCTGTAGCTGAATCAGAGGGGGCATCTTTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCACAATATTTTGGTGAGGATCCTGCCCGTTGTCCGTTTGAGCAAGTTACTACAACTCTCCTAAATTTTTTACGGTTGTTTCGCAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTGGAGAAGAAGAAAGCAGAGAAAGAGGCTGAAATGGAGAAGGCTAAAGGCAGCAGCTTGACAAGGAAAAGTGGAAAAGATAAAGAAGAAGAAAGCTGA 5115 0.4628 MALFRRFFYRKPPDRLLEISERVYVFDCCFSSDVLDEDEYKVYIGGIVTQLQDHFPDASFMVFNFREGDRRSQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGEQKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILGVLPLYDDGKGCRPVVRVYGPDPSKPVNRSSKLLFSTSKTQKHVRHYQQAECMLVKIDIHCRVQGDVVLECIHLSEDLVREEMMFRVMFHTAFVRSNILLLSRDEIDILWDAKDQFSKDFKSEVLFLDPDAVIPNLATVIVSGDANETESASPEEFYEAEEIFSNVIDTQEGKGDYDSTMVHDNAVDDGSHKEVWKEYSDPNTFQDSTPDDGIHQQVGRTDCGINAVKDITVDDVKYKLNESVDSDNHEVKDIVVDDGENKLTPTADTSDVMKTQETKEVTMDVHDELAAMQNMYDEDNNAAQEEFESEEGELVHDLSISKSDNLLPSAEKKQHPSNSKPMGDTVAAKQKTKHQEPHGFQAKLAKPNATTRWIPSNKGSYQDSMHVSYPPTRHNDSPTALSNATSAKEKMTDVKGIHDLNCNGDNSTSSDSMTETDSNSPRSSLLSVNDTSLQSATQAPQLSSNQVLQPSPPPPPPPPPPPKWPSSSLDGKVSTIPQPPPPPSLTLFSKQNKGMNLQAAIAPLPPPPPPPFIGKNKGSNLPPTYWKSVYSSIAVVGEKSGALPPTLDPPIARSAITAKVSESLGLVSLACPPPPPPPLKYVVTSIPPPPPPPPISSTDRAPLLSPSTPPTSLKAPLPPPPPPPPPPPPLCRVPSPSPPPPSPQPISKSPPPPPPPPPPPPLCRAPPPPPPLFSSASAPPPPPPPPSPPPFSTALSPSPSPSPPPPPPFSRASLPPPPPPPFSTVPSPPTPPSFSIVPLPSPPPPFSRALPPSPPPPPPPPPFSTTPLPPLLPPFNKAPPPPPPRPPFSTAPLPPPPPPLLPPSSGAPPPPPPPHPPSSGASPPPPPTPTPLLPSSGAPPPPPPPPFPPSSGAPPPPPIPTLSGAPPPPPLPISSGAPPPPPPPIPTSSGALPPLPISSGAPPPPPPPPFIPIIPTSSGAPPPPPPPPFLPSSGAPPPPPLPSMSRAPPPPPPPSRGPPPPPPPMYGAPPPPPPPMRGAPPPPPPAPGCGAPPPPPPPGGRGPPPPPPPGARPPGAPAPPGPPGGGPPPPPPLGSKGAVGADPRGRGRGLARLPGAGAAATRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAQEFDVSELEKLFSANVPKPADSGGKSGGQRKSAGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKEKLGKCEQYFLEQMKVPRVESKLRVFSFKIQFGTQITEFKKSLNTVNSACDEVRNSLKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAEKSPALLDFHLDLVSLEAATKIQLKSLAEEMQAIIKGLEKVKQEFAASENDGPVSEVFHKTLKEFIAVAESEGASLTNLYSVVGRNADALAQYFGEDPARCPFEQVTTTLLNFLRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGSSLTRKSGKDKEEES. 1705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03288 1704 Gene3D Formin, FH2 domain 1286 1672 IPR042201 -
Seca4g03288 1704 Pfam Formin Homology 2 Domain 1291 1660 IPR015425 -
Seca4g03288 1704 PANTHER FORMIN-J 1 858 - -
Seca4g03288 1704 Coils Coil 1661 1690 - -
Seca4g03288 1704 Gene3D - 205 336 - -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 579 618 - -
Seca4g03288 1704 Coils Coil 1567 1587 - -
Seca4g03288 1704 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Seca4g03288 1704 FunFam Formin-like protein 1284 1672 - -
Seca4g03288 1704 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 676 695 - -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 533 554 - -
Seca4g03288 1704 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 807 1293 - -
Seca4g03288 1704 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1362 1689 - -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 1672 1704 - -
Seca4g03288 1704 SMART PTEN_C2_2 198 1338 IPR014020 -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 533 718 - -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 630 675 - -
Seca4g03288 1704 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 807 828 - -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 1339 1363 - -
Seca4g03288 1704 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1285 1686 IPR015425 -
Seca4g03288 1704 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Seca4g03288 1704 MobiDBLite consensus disorder prediction 838 1265 - -
Seca4g03288 1704 CDD PTP_PTEN-like 16 190 - -
Seca4g03288 1704 SMART it6_source 644 1704 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03288 Seca-Chr4 56593387 56609738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03288 1 626 FH2 protein (formin) Gene Family AT5G07740 62.579 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03288 - - lang:109327684 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03288 4 56593387 56609738 Seca4g03288 4 56593387 56609738 ECH