Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03285 ATGGCCACTCAATCCCCTCCCTCTCCACTCGACCACGTCCTTCGTGACGTTGACGACTACGTTTTGGCAAATGAACCTGAAGGCTTGGCATCGGACACACTTCATTATGTTTACGAGCTTGTGCAGAATGGCAATGCAGCATTTCGAGAAAACAGAATGGAAGAGGCGATCAGCTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCGATCATCCTCAGCAATCGAAGCACAGCTTATATTAGGATTAGCCAATATTTAATGCATAGAACACCATCATCTTCGGAACATAGGCCATTGACTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTCAAGGATGCCGAGAAGCTTGTTGAACTCCAAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCTCTTCGTCTGTTGGAGAAATTTGAGAAGGCTCGGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGATTCTCTTCAACATTTGGAAAGAGTATCATCTAGTTCAACACGGTTAAGTAGACAAGGACAACCAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACTCCTTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGAATGAAGGTTTAATCAACGCTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTCGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGACTTATGATAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTATGCCTGTGAAGTGGAAATCACAGAATTGAAAGTCGTAGGAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTGAGTAG 1074 0.4171 MATQSPPSPLDHVLRDVDDYVLANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAISFYSRANNIKSSDPIILSNRSTAYIRISQYLMHRTPSSSEHRPLTGLDPTTLAELGFKDAEKLVELQSNSVKSYLLKANALRLLEKFEKARDVILSGLQVDPFSNSLRDSLQHLERVSSSSTRLSRQGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENEGLINAGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMIRRIMEGNHRMGMVIIDSSTGSLAEYACEVEITELKVVGDFASSVLGIKMGE. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03285 357 SMART tpr_5 37 70 IPR019734 GO:0005515
Seca4g03285 357 SMART tpr_5 128 161 IPR019734 GO:0005515
Seca4g03285 357 Gene3D - 277 353 IPR046336 -
Seca4g03285 357 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Seca4g03285 357 Gene3D Tetratricopeptide repeat domain 36 174 IPR011990 GO:0005515
Seca4g03285 357 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Seca4g03285 357 SMART ring_2 195 232 IPR001841 -
Seca4g03285 357 PANTHER RING FINGER PROTEIN 127 32 348 - -
Seca4g03285 357 SUPERFAMILY PUA domain-like 279 345 IPR015947 -
Seca4g03285 357 SUPERFAMILY RING/U-box 190 258 - -
Seca4g03285 357 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Seca4g03285 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 274 IPR013083 -
Seca4g03285 357 CDD RING-HC_LONFs_rpt2 192 236 - -
Seca4g03285 357 SUPERFAMILY TPR-like 36 163 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03285 Seca-Chr4 56571760 56580350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03285 193 265 C3H Transcription Factor Family AT2G42030 34.667 1.37e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03285 - - lja:Lj0g3v0312049.1 607.06