Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g03285 | ATGGCCACTCAATCCCCTCCCTCTCCACTCGACCACGTCCTTCGTGACGTTGACGACTACGTTTTGGCAAATGAACCTGAAGGCTTGGCATCGGACACACTTCATTATGTTTACGAGCTTGTGCAGAATGGCAATGCAGCATTTCGAGAAAACAGAATGGAAGAGGCGATCAGCTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCGATCATCCTCAGCAATCGAAGCACAGCTTATATTAGGATTAGCCAATATTTAATGCATAGAACACCATCATCTTCGGAACATAGGCCATTGACTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTCAAGGATGCCGAGAAGCTTGTTGAACTCCAAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCTCTTCGTCTGTTGGAGAAATTTGAGAAGGCTCGGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGATTCTCTTCAACATTTGGAAAGAGTATCATCTAGTTCAACACGGTTAAGTAGACAAGGACAACCAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACTCCTTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGAATGAAGGTTTAATCAACGCTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTCGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGACTTATGATAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTATGCCTGTGAAGTGGAAATCACAGAATTGAAAGTCGTAGGAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTGAGTAG | 1074 | 0.4171 | MATQSPPSPLDHVLRDVDDYVLANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAISFYSRANNIKSSDPIILSNRSTAYIRISQYLMHRTPSSSEHRPLTGLDPTTLAELGFKDAEKLVELQSNSVKSYLLKANALRLLEKFEKARDVILSGLQVDPFSNSLRDSLQHLERVSSSSTRLSRQGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENEGLINAGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMIRRIMEGNHRMGMVIIDSSTGSLAEYACEVEITELKVVGDFASSVLGIKMGE. | 358 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g03285 | 357 | SMART | tpr_5 | 37 | 70 | IPR019734 | GO:0005515 | |
Seca4g03285 | 357 | SMART | tpr_5 | 128 | 161 | IPR019734 | GO:0005515 | |
Seca4g03285 | 357 | Gene3D | - | 277 | 353 | IPR046336 | - | |
Seca4g03285 | 357 | Pfam | Zinc finger, C3HC4 type (RING finger) | 195 | 232 | - | - | |
Seca4g03285 | 357 | Gene3D | Tetratricopeptide repeat domain | 36 | 174 | IPR011990 | GO:0005515 | |
Seca4g03285 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 233 | IPR001841 | - | |
Seca4g03285 | 357 | SMART | ring_2 | 195 | 232 | IPR001841 | - | |
Seca4g03285 | 357 | PANTHER | RING FINGER PROTEIN 127 | 32 | 348 | - | - | |
Seca4g03285 | 357 | SUPERFAMILY | PUA domain-like | 279 | 345 | IPR015947 | - | |
Seca4g03285 | 357 | SUPERFAMILY | RING/U-box | 190 | 258 | - | - | |
Seca4g03285 | 357 | ProSitePatterns | Zinc finger RING-type signature. | 210 | 219 | IPR017907 | - | |
Seca4g03285 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 274 | IPR013083 | - | |
Seca4g03285 | 357 | CDD | RING-HC_LONFs_rpt2 | 192 | 236 | - | - | |
Seca4g03285 | 357 | SUPERFAMILY | TPR-like | 36 | 163 | IPR011990 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g03285 | Seca-Chr4 | 56571760 | 56580350 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g03285 | 193 | 265 | C3H Transcription Factor Family | AT2G42030 | 34.667 | 1.37e-08 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g03285 | - | - | lja:Lj0g3v0312049.1 | 607.06 |