Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03278 ATGGAGTCTGAGCAGCTTAATTTGAATAGAGAAGCTACTGCTGGTGGGGTTGGTGTAAATAATGGTAAGAGTGGTGATGGATTTATTGATAGAAGTAAAGTGCGGATTTTGTTATGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACGCTTCTCTTGAGATGCTCTTATCAGGTTACTTCAGTAAAGTCAGCAAGACAGGTAATTGATGCATTGAATGCAGAGGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGACAAAGACCTACGCAGAATTCCTGTTATAATGATGTCCGCACAAGATGAGGTATCAGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTTTTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGATTTGCAGAGAAGAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTATTCCAGAGACAGGAATATCAGTTCAACAAGATTTGGCCTTTGCAAATAATTGTACCTTTCAGAATGTAAACTTTGACATTGACTCTACTATTGCAATTGCTGCTTCCGTTGGGGAACCTCCAGATGTTCATGCACCTGAATGTCAGCCTGATGTGCATGGAGTTAACGATCACCCAACAGGACAATTTTCATCTGGTCCAAAGAAGAGTGGACTGAGGATTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTGAAGAGAAACTTCGAAGGGATTGTTCCTGCTGACAACAATGCTGCTACACACGTGAGGATGGAAGTTATGTATCAAGCAGGTGCTCAACAAGGGGTTAATGACCATCAAATACGTGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGTAATAGTGTACCTGATTCTTTTTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACCGCAAAAGCACTACAAGGAAGAAAATTTACATCATGGGGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCTTGAAGTATCTGGCATGGCTGCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCTGCACAACTGTATCAGAAGAATATCCAGGACCTGCAGAATCATGCTAGTTCTGCTATAATTGCACAGTACAATCATCTTCCACAAGGTGGTCCTCATGCAACGGGGATGGCATCTTTCCCATATTACCCAATGAGTATATGCTTGCAACCTGGTCAGATTCCTACAGCTCATCCATGGCCATCATTTGGAAGTTCAAGTTCATCTGAAGCAAAATTGAGTCAAGTTGATAGGAGAGAAGCAGCATTGATAAAGTTCAGACAGAAAAGGAAAGAACGTTGCTTTGATAAGAAAATTAGGTACGTCAATCGGAAACGACTTGCTGAAAGGCGACCTCGTGTGAGGGGACAATTTGTCAGAAAGTTGAATGGTGCTAATGTGGATCTTAATGGACAGCCTGATTCCATTGACTATGATGAAGAGGAAGAAGAGGATGAAGATGACCAGGGAGCTAGAGATTCCTCTCCCGAGGATGCTTGA 1737 0.4197 MESEQLNLNREATAGGVGVNNGKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPMKKGMKMLKYIARDKDLRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGFAEKNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTIPETGISVQQDLAFANNCTFQNVNFDIDSTIAIAASVGEPPDVHAPECQPDVHGVNDHPTGQFSSGPKKSGLRIGESSAFFTYVKASMLKRNFEGIVPADNNAATHVRMEVMYQAGAQQGVNDHQIRENGEACESQSQDDLPSSNSVPDSFSIERSCTPPASMEVSPQKHYKEENLHHGVMHPRNGTHCSELEVSGMAAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQNHASSAIIAQYNHLPQGGPHATGMASFPYYPMSICLQPGQIPTAHPWPSFGSSSSSEAKLSQVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGANVDLNGQPDSIDYDEEEEEDEDDQGARDSSPEDA. 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03278 578 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Seca4g03278 578 Gene3D - 34 214 - -
Seca4g03278 578 Pfam CCT motif 498 540 IPR010402 GO:0005515
Seca4g03278 578 MobiDBLite consensus disorder prediction 330 370 - -
Seca4g03278 578 SMART REC_2 34 149 IPR001789 GO:0000160
Seca4g03278 578 MobiDBLite consensus disorder prediction 553 578 - -
Seca4g03278 578 ProSiteProfiles CCT domain profile. 498 540 IPR010402 GO:0005515
Seca4g03278 578 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Seca4g03278 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 190 IPR045279 GO:0009736
Seca4g03278 578 MobiDBLite consensus disorder prediction 336 364 - -
Seca4g03278 578 SUPERFAMILY CheY-like 30 159 IPR011006 -
Seca4g03278 578 MobiDBLite consensus disorder prediction 540 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03278 Seca-Chr4 56502212 56507826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03278 23 577 Response Regulator Gene Family AT5G61380 51.040 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca4g03278 Response_reg 2.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03278 K12127 - gmx:100799728 934.865