Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03271 ATGGAAAACGTTTCAGTTTTTTGTAAGGAAGAGGATCAGATGGTTTTGCCACCTGGTTTTCGGTTTCATCCAAGTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAGGGTAACTGACACCAATTTCTCTGCTAGAGCCATTGGAGAGGTGGACTTAAACAAATCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACTAACAGAGCTACTGGAGAAGGATACTGGAAGGCCACAGGGAAAGATAAGGAGATTTACAGAGGAAAATCTCTGGTTGGAATGAAGAAAACTCTTGTTTTTTACAAAGGAAGAGCACCTAAAGGAGAGAAAACCAACTGGGTCATGCATGAATACAGACTTGAGGGTAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTACAGGTGGCAAGAAAGCTCATATTTCTGGGATAATGAGATTGGACTCTTTTGGAAATCAATTGGGTTCTTCTGATCTGCCACCTCTTACAGATTTCACACCTCCCATTGGCAAAACCAAAGAACAACTGAGTGTGACTGAATCTGGTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGGTGGGATCTTTGATTCCTTCAGCAACTCCCTTATTGGGGTTCCTTCTACTAGTTCATTCTATCCTACTCAAGGGATTCAAGCCCCACCAAATTTGCCATTACCCAATTCTGTTTACAACACCCAAGACCAAACTATGCTCAGAGCCTTACTTGATAACCATGGATCAAACTTAAGGAATGGTTTCAATTTCAAATCACAGGGTGATATGGTAAGTGTCTCTCAGCAAACAGGTTTGACTACTGATGTGAATGCTAAAAACTCTTCTGTTATATCAAATTTTGACATGGGTAGGAGGCCCTTTGACAATCAGCACCCACCAATGGACCTTGCCAGCATGTGGAATTACTAA 1044 0.4157 MENVSVFCKEEDQMVLPPGFRFHPSDEELISHYLYKRVTDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATGEGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSTGGKKAHISGIMRLDSFGNQLGSSDLPPLTDFTPPIGKTKEQLSVTESGYVPCFSNPIDVQRNQGGIFDSFSNSLIGVPSTSSFYPTQGIQAPPNLPLPNSVYNTQDQTMLRALLDNHGSNLRNGFNFKSQGDMVSVSQQTGLTTDVNAKNSSVISNFDMGRRPFDNQHPPMDLASMWNY. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03271 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 266 - -
Seca4g03271 347 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Seca4g03271 347 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Seca4g03271 347 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Seca4g03271 347 FunFam NAC domain-containing protein 100-like 25 170 - -
Seca4g03271 347 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03271 Seca-Chr4 56375917 56377210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03271 14 347 NAC Transcription Factor Family AT5G07680 59.366 3.98e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g03271 NAM 8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03271 - - gmx:100170719 532.717