Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03261 ATGGGAAGAGTTAAACTCAAGATAAAGAGATTAGAGAGCACAGACAACCGACATGTAACATATTCGAAGCGGAGAAGTGGAATATTGAAGAAAGCAAAGGAGCTATCAATTTTATGTGATATTCAAATTGTCCTTCTCATGTTTTCTCCCACAGGAAAGCCTACATTACTACAAGGAGAGCGCGGTAAATTTGAGGAGCTCATTGCAAAATTTGCTCAACTTAATCCTCAAGAAAGAACCAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTACACATAAGAGATTTCTTGGGTTCAAGCAGTCAAACAGTGGAGGAATTAAGTCATCAAATGGGAGTTCTACAAGTTCAACTTTCTGAAGTACATCAGAGACTGAGGTGCACATTTGGAGCTTTTGGTTGTTAA 435 0.3839 MGRVKLKIKRLESTDNRHVTYSKRRSGILKKAKELSILCDIQIVLLMFSPTGKPTLLQGERGKFEELIAKFAQLNPQERTKRKLESLEALKKTFKKLDHDVHIRDFLGSSSQTVEELSHQMGVLQVQLSEVHQRLRCTFGAFGC. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03261 144 Coils Coil 77 97 - -
Seca4g03261 144 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Seca4g03261 144 CDD MADS 2 54 - -
Seca4g03261 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 134 - -
Seca4g03261 144 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Seca4g03261 144 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Seca4g03261 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g03261 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g03261 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g03261 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Seca4g03261 144 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Seca4g03261 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03261 Seca-Chr4 56243614 56246266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03261 1 135 Type I MADS-box Gene Family AT2G03060 67.407 2.22e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca4g03261 SRF-TF 4.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03261 - - aip:107633054 225.713