Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03255 ATGGAGAATCAGCAACTCATGAGTTGGAATTTTAACTATGAAATACTAGAAGATTATCCATTTGAAGCTACGTGCCCATTATCTTCATATGACTTTTGCAGGGGTAATGCTAGTGATGATGGGTATGTTTCATTGGATTGGCCATATGGAAATGGATTTCCCATCCAAGATAGCATTTCTGATGTTATCCCTTTTGTGGAATGTTATCACCCTGAACTTCTCTATGAAGCTCTGCCCACTGAACCAACAACACCATTAAGCGTCCAAGACTATGACATCTGTGATGTTAAAAATGTGCTTTCTGTGTGGAATGAACTTGATGCTGGGTTTGAGTCAGAGAAATCTGTTTTTTCAACATGCAACAATATTAGAGAAAGTGAAAAGGAAAAAGATTTGAAGGGTAAGCAATGCAGTGAAGAGAATATTAACAGTGCCAGAATGTTATCAAGGAAGAACATTTCTCAGTACTTCTACATGCCAATATCAAAAGCAGCTAGAGAACTTAATGTGGGGCTGACACATTTGAAGAAAAGGTGCAGGGAGTTAGGAATTCAGAGGTGGCCTCATAGGAAGCTAATGAGCCTTCAAACCCTTATAAAAAATGTACAAGAGCAAGGAGAGGGTGGGCATGGAAGTGATGAAAAGATAAGGAATGTGATTGAGATATTGGAGAAAGAAAAGAAAATGTTGGAGGAAATGCCAGATTTGGAACTTGAAGAAAATACGAAAAGGCTTAGACAAGCGTGTTTTAAGGCCAATTACAAAAAGAGGAGGCTCATGGTCATGGGCTTGATGGAAATGGAGTCTTGTTCTCTCAGTGGCAGTTAA 828 0.3901 MENQQLMSWNFNYEILEDYPFEATCPLSSYDFCRGNASDDGYVSLDWPYGNGFPIQDSISDVIPFVECYHPELLYEALPTEPTTPLSVQDYDICDVKNVLSVWNELDAGFESEKSVFSTCNNIRESEKEKDLKGKQCSEENINSARMLSRKNISQYFYMPISKAARELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNVQEQGEGGHGSDEKIRNVIEILEKEKKMLEEMPDLELEENTKRLRQACFKANYKKRRLMVMGLMEMESCSLSGS. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03255 275 ProSiteProfiles RWP-RK domain profile. 128 215 IPR003035 -
Seca4g03255 275 PANTHER PROTEIN RKD4 138 260 IPR044607 GO:0003700
Seca4g03255 275 Coils Coil 213 233 - -
Seca4g03255 275 Pfam RWP-RK domain 148 195 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03255 Seca-Chr4 56161626 56162781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03255 53 258 AtRKD Transcription Factor Family AT1G18790 44.762 3.74e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g03255 RWP-RK 5.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03255 - - gmx:100782238 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03255 4 56161626 56162781 Seca4g03255 4 56161626 56162781 ECH