Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03247 ATGGGGAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCAGAGGAGGACATCATCTTAGTCTCTTACATTCAAGAACATGGACCAGGGAATTGGAGATCAGTTCCCACCAGTACAGGTTTGATGAGATGCAGTAAAAGCTGCAGGCTTAGATGGACTAACTATCTTCGACCAGGCATCAAACGAGGCAATTTCACTGATCATGAAGAAAAAATGATAATCCACCTCCAAGCGCTTTTGGGCAACAGATGGGCTGCTATAGCATCCTATCTTCCACAGAGGACAGACAATGACATAAAAAACTATTGGAACACCCATTTAAAGAAAAAGCTGAAGAAGATGCAAAATGGGGATGAGGATGGTGATCACAAAGAAGGACACTCTAATTCACAGGCAAAAGGTCAGTGGGAGAGAAGGCTTCAAACAGATATACACATGGCCAAGCAAGCCTTGTGTGAGGCACTGTCCCTTGACAAGCCAACCCCAGAGACTAACTCCTTTAATTACCATCACCCTGTTACCAACAACGCCACAACACCAAACCAAGCTTCCCCATATGCATCAAGCGCTGAAAACATAGCCCGATTGCTCGAAAACTGGATGAAGAAAACCCCGAATTACTCATCAACTGAGACAAATTCAGGAAATTCGTTCAGCAACATGGTGACCACAGGATCCAGTTCTAGTGAAGGAACACAGAGCACCATCACATGCACACCAGAACATGCTTTTGATTCTCTGTTGAGTTTCAACTCTGATCGTTCTCAATCTGAAGAAAACACCAACTTTACTGCCACTGGCCCCTTCCAAGATGAAAGCAAGCCACTAAACCAGGAGCCACAAGTCCCTCTCATGTTGCTGGAGAATTGGCTGTTTGATGATGGAGCAGCTCAATGCAATGAAGATCTAATAAACACGTCATTGGAGGAAAGTACAACAGGGTTGTTTTAG 966 0.4462 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTSTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQNGDEDGDHKEGHSNSQAKGQWERRLQTDIHMAKQALCEALSLDKPTPETNSFNYHHPVTNNATTPNQASPYASSAENIARLLENWMKKTPNYSSTETNSGNSFSNMVTTGSSSSEGTQSTITCTPEHAFDSLLSFNSDRSQSEENTNFTATGPFQDESKPLNQEPQVPLMLLENWLFDDGAAQCNEDLINTSLEESTTGLF. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03247 321 FunFam Transcription factor MYB30 68 126 - -
Seca4g03247 321 CDD SANT 69 112 IPR001005 -
Seca4g03247 321 Gene3D - 13 66 - -
Seca4g03247 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca4g03247 321 CDD SANT 16 61 IPR001005 -
Seca4g03247 321 SMART sant 13 63 IPR001005 -
Seca4g03247 321 SMART sant 66 114 IPR001005 -
Seca4g03247 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g03247 321 MobiDBLite consensus disorder prediction 211 241 - -
Seca4g03247 321 FunFam MYB-related transcription factor 13 66 - -
Seca4g03247 321 Gene3D - 68 143 - -
Seca4g03247 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Seca4g03247 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca4g03247 321 MobiDBLite consensus disorder prediction 258 281 - -
Seca4g03247 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g03247 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca4g03247 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g03247 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g03247 321 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03247 Seca-Chr4 55904766 55906446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03247 1 299 MYB Transcription Factor Family AT5G62470 54.310 5.99e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g03247 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03247 K09422 - gmx:100807020 501.13