Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03243 ATGCGGCGATTGGGTTTGGCTGCGAGATTGGAGGCGGCGGTGACTGTGATGGTGGCCAACACTAGTGGTTATGGTGCGACGAGGTTGTTGTATCGCTTGTCCTGCAAAAAGGTTTCTTCAAGAAACTTCTTTAGGTTTCTTCCTATCTATTGTGATATAATCATTCGGTATTTGATGAGCAATGATCCTATGGCAGTAACAGACCCGACCCGAATAGGACGGATTGGGACGGGTCAAAGGGACGAATCGGGTCCTGAAAACCTCCTACTCGGAATATGGGGTAGCCCTTTTGTCTCCAGGGTGATTTTGGCCCTTAAACTTAAGGGCATAGCCTACGAATATGTAATAGAAGATTTAACAAACAAAAGTGATGTGCTTGTCAAGTCCAATCCTGTTTACAAAAAGGTTCCTGTGCTTATTCATAATGGAAAGCCCATAGCTGAATCCCTTGTGATCCTTGAGTATATTGACGAAACTTGGAAACATGGTCCTAAACTGCTGCCTCACAATCCCTATAAAAGAGCCCAAACTCGCTTCTGGGCTAAATTCTTTCATGAACAGCTGAATCTGCTTGAAAATGGGATGAAGACTTTTTTTGAGGAAGGCAAACCTTGTGTTGACCAGAATAACGTTGGTCTCCTAGACATTGTCTTTTGTTCGTTGTTTGGCCCTCACAAGGCTCATGAAGAAGTTCTTGGGATAAAGTTCATGGTGGCAGAGAAGTTTCCTGTGTTATTTTCTTGGCTGATGGTAGGCCTGTCAAATTAA 768 0.4375 MRRLGLAARLEAAVTVMVANTSGYGATRLLYRLSCKKVSSRNFFRFLPIYCDIIIRYLMSNDPMAVTDPTRIGRIGTGQRDESGPENLLLGIWGSPFVSRVILALKLKGIAYEYVIEDLTNKSDVLVKSNPVYKKVPVLIHNGKPIAESLVILEYIDETWKHGPKLLPHNPYKRAQTRFWAKFFHEQLNLLENGMKTFFEEGKPCVDQNNVGLLDIVFCSLFGPHKAHEEVLGIKFMVAEKFPVLFSWLMVGLSN. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03243 255 SUPERFAMILY Thioredoxin-like 89 187 IPR036249 -
Seca4g03243 255 Gene3D - 166 186 - -
Seca4g03243 255 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 85 164 IPR004045 -
Seca4g03243 255 SFLD Main (cytGST) 89 189 - -
Seca4g03243 255 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 90 248 IPR045073 -
Seca4g03243 255 CDD GST_C_Tau 171 248 IPR045074 GO:0004364|GO:0006749
Seca4g03243 255 CDD GST_N_Tau 89 160 - -
Seca4g03243 255 Pfam Glutathione S-transferase, N-terminal domain 89 158 IPR004045 -
Seca4g03243 255 SUPERFAMILY GST C-terminal domain-like 158 249 IPR036282 -
Seca4g03243 255 Gene3D - 187 251 - -
Seca4g03243 255 Gene3D Glutaredoxin 83 165 - -
Seca4g03243 255 SFLD Glutathione Transferase (cytosolic) 89 189 IPR040079 -
Seca4g03243 255 FunFam Tau class glutathione S-transferase 83 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03243 Seca-Chr4 55749053 55757414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03243 81 249 Glutathione S-transferase Gene Family AT1G74590 40.513 4.18e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03243 K00799 - gmx:547581 221.09