Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03235 ATGGAAGGAGGTGATGATTTCCACCACCACCATCACCACCACCACCGACAAAACTTCCCATTCCAACTACTCGAGAATAAAAAAGAAGACCAAGAAAGCGCTTCCTGTTCCACCTCATCTTCCTCCCCATACCCATCCTTAGCCATCTCCGCTGAACCAACAACTTCCAACTCAAGCCGATCTAACAACCAACAACTCGTAACAACCGCCGAACCTTCCAACAAAAAACCACCTCCAAAACGAACCTCCACAAAAGACCGCCACACGAAGGTCGACGGCCGCGGCCGTCGCATTCGAATGCCGGCTCTCTGCGCCGCCAGAGTCTTCCAACTCACGCGCGAGCTCGGACACAAATCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAAGCCGAACCCGCCGTCATCGCCGCCACCGGCACCGGCACAATCCCAGCCAACTTCACATCCCTCAACATCTCCTTACGAAGCTCAGGCTCCTCCATGTCGGTTCCATCTCAGCTTCGATCTTCATACTTCAACCCTAACTTCTCTCTTCCACAACGAAGAACCAGTTTATTCTCCGACACCACCAACAATTCCTCCGCCACCGCAACGCTTCTCAATTTCCAATCCAATAACAACTTAATCAACACTGGTATGTTTCAAGCTAAGCATGAATTGCGTGAAGGTAGCAACACGGCCAACACGACGTCGTTGGATAAACGAAGAGGTGGAGAGCAAGAGGAGCAGCATCAAGTTGGAAGCTATTTGTTGCAGTCAAGTAGTGCAGGGGCAATTCCGGCAAGTCATGCTCAAATTCCAGCTAATATATGGATGTTGGCGAATTCTAATAACCAACAACAAGGAGGTATGACTATGAGTGGTGAGGCTTCTGCTTTGTGGATGAATAACAGTGGTTTGTATAGAAGCACTGTGTCTAGTGGATTGCATTTCATGAACTTCCCAACCCCTATGGCGTTGTTGCCAGGTCAGCAATTAGCGTCTTCTGGAATTGGCGCTGGAAATATAAACATAAATGAAGGACATTTGAGTATGCTTGCTGGGTTAAACCCTTATCGGCAGGTCATTGGCGTTTCGGAGTCTCAGGCGAGTGGATCACATTCACATAATCATGGTGGAAGTGAGGATCGACATGATAACACCAGTCACCATAACACATAA 1164 0.4905 MEGGDDFHHHHHHHHRQNFPFQLLENKKEDQESASCSTSSSSPYPSLAISAEPTTSNSSRSNNQQLVTTAEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLPQRRTSLFSDTTNNSSATATLLNFQSNNNLINTGMFQAKHELREGSNTANTTSLDKRRGGEQEEQHQVGSYLLQSSSAGAIPASHAQIPANIWMLANSNNQQQGGMTMSGEASALWMNNSGLYRSTVSSGLHFMNFPTPMALLPGQQLASSGIGAGNININEGHLSMLAGLNPYRQVIGVSESQASGSHSHNHGGSEDRHDNTSHHNT. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03235 387 Pfam TCP family transcription factor 82 245 IPR017887 -
Seca4g03235 387 MobiDBLite consensus disorder prediction 1 97 - -
Seca4g03235 387 MobiDBLite consensus disorder prediction 371 387 - -
Seca4g03235 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 375 IPR005333 GO:0003700
Seca4g03235 387 ProSiteProfiles TCP domain profile. 84 138 IPR017887 -
Seca4g03235 387 MobiDBLite consensus disorder prediction 362 387 - -
Seca4g03235 387 MobiDBLite consensus disorder prediction 18 32 - -
Seca4g03235 387 MobiDBLite consensus disorder prediction 220 247 - -
Seca4g03235 387 MobiDBLite consensus disorder prediction 78 97 - -
Seca4g03235 387 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03235 Seca-Chr4 55598025 55599188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03235 13 385 TCP Transcription Factor Family AT1G69690 41.855 4.78e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g03235 TCP 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03235 - - gmx:100809154 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03235 4 55598025 55599188 Seca4g03235 4 55598025 55599188 ECH