Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03230 ATGGATTCTGTGAAGATTTTCAAAGGTTATGGCAAAGTGGAAGACAAACAGGACCACCTCGAAGATCAACAACATCACCAACACCACCACCGAAAAACCTCCAAGTCCCTCATCGCCACCGTTTCCATCTTCGCCATCCTCTCTCTCACTGTCGCCTTAGCTTTCGCCCTTGCAGCCCTCGTCCACCACACTGACAACGAGCCATCCGAACAACAACAACAATCCCTCAACTCGGCCGAGTCCATCCGAATCGTCTGCAACGTGACTCACTTCCCTGACTCGTGCTTCGCCGCCGTATCCTCCTCCGCCCAAAACCCCACCGATCCCGAAGCCATCCTCAGCCTCTCTCTCCGTGCCTCCATCGATGAGCTCACCAGGCTCGCCTCTTCGCTCGGAGCCAAAGCCTCTAATTCCAAGGGGTCCGCACTGGCTGACTGCAAGGATCAGATAGACGATGCGCTGAGTCGACTCAACGACTCGCTGTCGGCGATGGCGGCAGTTCCCGGCAGCGGCGGCGTAACGCTGACGGATAGAAAGATCAGTGACATCCAGACGTGGGTGAGCGCGGCGATGACGGACCAACAGACTTGCGTTGATGGATTGGAAGAGGCTGGGTCTGTGGCTGCTGTTGCTGAAGTGAAGAGCATGATGAAGAGATCGAGCGAGTACGTTAGCAACAGCTTGGCCATTGTTGCTAATATACGCACTTTGTTACAACAACTCCATATGCCACTCCATTGA 741 0.5479 MDSVKIFKGYGKVEDKQDHLEDQQHHQHHHRKTSKSLIATVSIFAILSLTVALAFALAALVHHTDNEPSEQQQQSLNSAESIRIVCNVTHFPDSCFAAVSSSAQNPTDPEAILSLSLRASIDELTRLASSLGAKASNSKGSALADCKDQIDDALSRLNDSLSAMAAVPGSGGVTLTDRKISDIQTWVSAAMTDQQTCVDGLEEAGSVAAVAEVKSMMKRSSEYVSNSLAIVANIRTLLQQLHMPLH. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03230 246 NCBIfam pectinesterase inhibitor domain 48 233 IPR006501 GO:0004857
Seca4g03230 246 CDD PMEI-like_3 85 236 - -
Seca4g03230 246 Pfam Plant invertase/pectin methylesterase inhibitor 81 230 IPR006501 GO:0004857
Seca4g03230 246 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 234 IPR035513 -
Seca4g03230 246 PANTHER PECTINESTERASE 51 232 - -
Seca4g03230 246 SMART PMEI_2 77 230 IPR006501 GO:0004857
Seca4g03230 246 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 235 IPR035513 -
Seca4g03230 246 FunFam Pectinesterase 78 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03230 Seca-Chr4 55470003 55470743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03230 1 246 Carbohydrate Esterase AT1G53840 38.372 8.34e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03230 - - aprc:113852848 254.603