Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03229 ATGTCTGGCCAGAGAAGCTCCAGTGCTTTAAATTTTTCAGAGTGTGAAATTAATGATCTGGTGTTGAGGTTACAAGCACTGCTGCCACAACTCAACCAAACAAGCAAATCAAGGGCATCATTGACAGAGATCTTGAAGGAAACTTGTTCTCACATCAATAGGCTACAGAAAGAGGTGGAACACCTTGGTGAAAGGCTAGCAGAGCTGATGGATTCTGTAGACATTAGTGATATTGACGAGGAGCATCTCAGAAAGCTTTTGCAATAA 267 0.4195 MSGQRSSSALNFSECEINDLVLRLQALLPQLNQTSKSRASLTEILKETCSHINRLQKEVEHLGERLAELMDSVDISDIDEEHLRKLLQ. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03229 88 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 71 IPR036638 GO:0046983
Seca4g03229 88 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Seca4g03229 88 Gene3D - 14 86 IPR036638 GO:0046983
Seca4g03229 88 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Seca4g03229 88 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03229 Seca-Chr4 55467325 55468424 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03229 2 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 44.595 6.05e-14 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03229 HLH 0.00026 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03229 - - gmx:100810266 118.242