Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03226 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAACTAGTTCAAGGAATATCACTGACGATCAGATCAATGATCTTGTCTCCAAATTGCAACAGCTTCTTCCAGAGATTCGCGATAATAGGCGCTCTGACAAGGTTTCAGCGTCGAAGGTTTTGCAAGAGACGTGCAACTATATTAGAAGCTTACACAGGGAAGTCGATGACCTAAGCGAGCGTTTGTCTGAGCTTTTGGCTACAACGGACACAGCTCAAGCTGCAATCATTAGAAATTTACTTATGCAATAG 282 0.4397 MSSRRSRSRQTTSSRNITDDQINDLVSKLQQLLPEIRDNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03226 93 Gene3D - 18 89 IPR036638 GO:0046983
Seca4g03226 93 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Seca4g03226 93 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g03226 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 79 IPR036638 GO:0046983
Seca4g03226 93 FunFam Transcription factor ILI6 7 88 - -
Seca4g03226 93 Pfam Helix-loop-helix DNA-binding domain 20 62 IPR011598 GO:0046983
Seca4g03226 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Seca4g03226 93 Coils Coil 58 78 - -
Seca4g03226 93 CDD bHLH_AtPRE_like 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03226 Seca-Chr4 55397246 55398128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03226 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 73.118 3.92e-42 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03226 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03226 - - gmx:100527636 157.532