Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03225 ATGGGAAATTGCATCAGAGCTCGTTCCAAGGTTGATAACTCTATGAACTCTCACCCCACTTTTGCAGATGCTACAAAAGTTCCTGGTAGAAGCATCCATTACTTGGTTCATTCAAGTCAAAAAATGCATGGATACCATGATGATGGTAAACTTAAGACTCTCCCAACTCCAAAATCTGAAGGTGACATACTTTCCTCCCCAAATTTAAAAGCCTTCATATTCAATGATCTGAAGAACGCCACAAGAAACTTTCATCCTGATAGTCTGATAGGACAAGGGGGATTTGGTCATGTCTATAAGGGGTGGATTAATAAGCAATCCCTTGAGGCTGCAAGACCTGGATCTGGAATGATTGTAGCTGTGAAGAAGCTAAAACCTGAAGGTTTTCAAGGCCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCTAATCTTGTGAAGCTTTTTGGATATTGCTTGGATGGGGATAATAGACTTCTAGTCTACGAATACATGCCCAAAGGCAGCTTGGAGAATAATCTATTTTGCATTGCAGGGGGCGTACGACCACTTGCTTGGACAACAAGGATCAAAGTTGCTGTTGGTGCTGCTCAAGGTCTCACCTTCTTACATGACTCTGAACAACCAGTTATCTATCGTGATTTCAAGCCTTCCAATATTTTATTAGATTTGGTATGTTTGCTAACCAATAACATTCTTATGATTTTTGTAGGCATTTGGTATGAATGTCCCAGTACTCTGGCATTTGAACATGTTCTCTACAAAATTCAGGAATTCAATGCAAAACTATCAGACTTTGGTTTGGCCAAAGCAGGGCCCACTGGTGACCTTACTCATGTTTCTACTCAAGTCCTAGGTACTGAAGGCTATGCAGCTCCGGAATATATTGCAACAGGTATCATTTTGGCCAAAGTTTCATCTTTATTCTTTTTGTTCCAAAAAATTCTAAGTTATTAA 972 0.4002 MGNCIRARSKVDNSMNSHPTFADATKVPGRSIHYLVHSSQKMHGYHDDGKLKTLPTPKSEGDILSSPNLKAFIFNDLKNATRNFHPDSLIGQGGFGHVYKGWINKQSLEAARPGSGMIVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLFGYCLDGDNRLLVYEYMPKGSLENNLFCIAGGVRPLAWTTRIKVAVGAAQGLTFLHDSEQPVIYRDFKPSNILLDLVCLLTNNILMIFVGIWYECPSTLAFEHVLYKIQEFNAKLSDFGLAKAGPTGDLTHVSTQVLGTEGYAAPEYIATGIILAKVSSLFFLFQKILSY. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03225 323 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Seca4g03225 323 FunFam Serine/threonine-protein kinase BIK1 52 169 - -
Seca4g03225 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca4g03225 323 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g03225 323 Pfam Protein kinase domain 85 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03225 323 ProSiteProfiles Protein kinase domain profile. 84 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03225 323 Gene3D Phosphorylase Kinase; domain 1 56 169 - -
Seca4g03225 323 PANTHER OS01G0588500 PROTEIN-RELATED 42 309 - -
Seca4g03225 323 Gene3D Transferase(Phosphotransferase) domain 1 170 311 - -
Seca4g03225 323 SUPERFAMILY Protein kinase-like (PK-like) 62 304 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03225 Seca-Chr4 55364687 55367819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03225 70 315 Glycoside Hydrolase AT3G07070 48.178 1.32e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g03225 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03225 - - lja:Lj0g3v0272349.3 425.631