Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03220 ATGGCAAATGGAAACACACCCAATGGACCCGCGACTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTACCAGAAACGAAATGTGAGGACAAACGTTCGGCTCATCTTGTTCCCGTTCTTTCTCTGTATATTGCTGGTTCTCATTCAAAAGCTGCTCGATAACCAATTGGATAAAGCTAAATACAGGTGTGGCTGCATTTGTACCAAGAAACAAGGTGACCAGTGCCTGGAGAAAACTTGTGGGATTCAGCACTCGGATTTGGACCAAGTTAGCGCCTGTCCCATTACTAACCCTCCCGAATGGCCTCCTTTCTTGCAATTGCCCGCTCCACAATACCGTGCTGTTAGAACAGAGTTTCTTCCCTTTTCTGATGTTCCAAACCCCTCCTGCAGGACCAATGGCTCATGTCCCGTTACCATGCTCTTCACTGGCACTAACCACTCTTTTGGACAAATTTTGTCTGGAAATATGATACCAAGTACCTTTGCTATAAATAACTCTGATTTTATGGGTAGTTTGGCAACAAATGTCTTGGGATCACCATCGAAGACAGAGTACACCAATTTTCTGGAACCTGCATTCTTTTCGAATCTTTCTATTTATTATCTACAAAGTCAGTGCACACAGAACTCTACCTTCTCCATTCCTGTTAACGTATCGACCACTAGCAGGCAGCAAGAGGTAAGATGTGCTCAGGGTGTACCTTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGTTATTTAAAGGTTATAGAAAAGGTAACACGGAGAGACAGATCAATGAGATAGCAGTAGGTTATGATTTTCTAAATTCAAATGGGAATATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTGATCCTATAGCATTGGCACGTGTTCCTCGTTCTGTAAATCTGGTATCAAATGCCTTCCTTCAGTTTCTGCTGGAACCTGGTAGCAAAATATTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCAATCAAGTTTGATTTGGCTTCTCTTCTAGGTGGTCTCTTCTTTACATGGGTCATCCTACAACTTTTCCCTGTTGTCCTGACATCCCTAGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGACCATATTGGTTGATTTCATATGGTTATTTTCTTGCCATATCTATTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAATTTACAAATTTCGCTGGCATTTCTATTGGCTTCCCCGTTTTCAAATGTTAAGACTGCCACAGTGATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGGTGGCTTTCTTTTCCGATTTTTTGTTCAACAGACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGTTATTTCCTGGGTTTGCCTTATATCGTGGGTTATATGAATTTGCGGAATCTGCCTTCAATGGGGATGCTTTGGGGACTCATGGTATGCGGTGGGGAGATCTAAGTGATAGCTCAAATGGCATGAAAGAGGTCTTAGTTATCATATCCGTGGAGTGGATTTTGGTTCTTCTCTTTGCTTATTACGTCGATCAAGTTTTGTCATCAGGAAGTGGGAGAAGCCTTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTCGGAAGCCTAGTATCAAAAGGCAGGGATCTAAAGTTTTTGTTGACATGGAGAAACCTGATGTCAATCAAGAGAGGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGATAACCTGAGAAAGGTATATCCAGGGAGGGATGGTAACCCAGCAAAATTTGCAGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCATTTATCAATATGATGATTGGTCTCACCAAGCCAACCTCTGGTTCAGCATTTGTTCAAGGTCTTGACATAAGAACTGACATGGACGGAATATATACTAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAACTTTGACAGGAAGAGAGCACCTGCTCTTCTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTAACACAAGCGGTGGAAGAATCTTTGAAAAGTGTAAATCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGAACGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCGAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGATGGTAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACGATGACAGCATCTGTGGATCATGAAAAGGATGCAGAGAACTTGGTGCAGCAGCTCTCTCCAAACGCTAACAAGATTTACCATATCTCTGGTACCCAGAAATTTGAGCTGCCAAAAGACGAAGTTAGAATAGCGAATGTATTCCGAGCAGTTGAAACTGCAAAAAGAAATTTCACGGTTTCTGCTTGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATTAAGAAACGGAATGTGAAGACAAACGTTCGGCTCATCTTGTTCCCGTTCGCGCTGTGTCTGCTACTGGTTCTCATCCAAAAGCTGGTGGATATCCAATTGGACAAGGCTTCAAATAAGTGTGGCTGCGTTTGTGCTAAGAAACAAGGGGACCAGTGCCTGGAGGAGGTGTGTGGGATTCAGTATTCAGATTTTGACCAAGTTGGCACCTGTCCCCTTCCTAACCCTCTCGAATGGCCTCCTTTCTTGCAATTGCCGGCTCCACAATACCGAGCTGTCAGAACGGACTTTCTTCCCTTTTCTGATTTTCCAAATCCCTCCTGCAGAACCAATGGCTCATGTCCTGTCACCATGCTCTTCACTGGCACTAACAACTCTTTTGGACAAATTTTGTCTGGAAATATGATACCAAGTACCTTTGCTATAAATAACTCCGATATTATGGGTAGTTTGGCAACAAATGTCCTGGGGTCAGAATCAATGACAGAGAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAGAGTCAGTGCACACAGAACTCTACCTTCTCCATTCCTGTTAACGTATCGACCACTAGCAGGCAGCAAGAGGTAAGATGTGCTCAGGGTTTACAATTGTGGCGTAATAGTTCTTCTGAGGTGAACGATGAGCTATATAAAGGTTATAGAAGAGGTAACACGGAGAGACAAATCAATGAGATTTCTGCAGGTTATGATTTTCTAAATTCAAATGCGAAAATATTTAATGTGAGCATATGGTACAACTCAACCTACAAAAATAACTCTGGCTTTGGTCCTATTGCATTGGCACGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCCTACCTCAAGTTTCTGCTGGGATCAGGTGCCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCGCAATTAACTTTGATTTGGCTTCTCTTCTGGGCGGTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTGTTGTCCTGACATCCCTAGTTTATGAGAAGCAGCAGAAATTAAGAATCATGATGAAAATGCATGGTCTTGGGGATGGGCCATATTGGATGATTTCATATGGTTATTTCCTTGCCATATCAGTTATATACATGTTGTGTTTTGTGATATTTGGCTCTGTCATAGGGTTAAAATTCTTCACGATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTTCGCTGGCATTTCTATTGGCTACCCTGTTTTCAAATGTTAAGACCGCTACAGTAATTGCATATATTGGTGTGTTTGGAACTGGGCTATTAGGTGGCTTTCTTTTCCAATTTTTTCTTCAAGATACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTTTCCTGGGTTTGCTTTATACCGGGGATTATATGAATTTTCTGAATCTTCCTTCAATGGGGATGCTTTGGGGACTAATGGTATGCGATGGGGAGATCTGAGTGATAGCACAAATGGCATGAAAGAGATCTTAATTATCATGTTCGTGGAGTGGCTATTGGTTCTATTTTTCGCTTATTACATCGATCAAGTTCTGTCATCAGGAAGCGGGAAAAGTCCTCTTTTTTTCTTGAAAAGATTTCAGAAAAAGCGCAGCTCATCTTTTCGGAAGCCTAGCATCCAGAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTGGAGCAGCTGCTATTAGAACCAACTATTAATCATGCAATTGTATGTGACGACCTGAGAAAGATCTATCCGGGGACAGATGGTAACCCAGAGAAATTTGCAGTGAGAGGGTTGTCCCTTGCCTTGCCTCAAGGGGAGTGCTTTGGTATGCTTGGTCCGAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTGACATGGACGGAATATATACTAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAACTTTGACAGGAAGAGAGCACCTGCTCTTCTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTAACACAAGCGGTGGAAGAATCTTTGAAAAGTGTAAATCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCGAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGATGGTAGTTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACGATGACAACATCTTTGGATCATGAAAAGGATGTAGAGAACTTGGTGCAGAAGCTCTCCCCAAATGCTAACAAGATTTACCATATCTCTGGTACCCAGAAGTTTGAACTGCCAAAAGACGAGGTTAAAATAGCGAACGTATTCCGAGCTGTTGAAACTGCAAAAAGAAATTTCACAGTTTCTGCGTGGGGTTTAGCTGATACCACGTTGGAAGATGTCTTCATTAAGGTTGCACGCGGGGCTAAAGCATTTGACACCTTGTCATAA 5577 0.4156 MANGNTPNGPATFWTQANALLRKNLTYQKRNVRTNVRLILFPFFLCILLVLIQKLLDNQLDKAKYRCGCICTKKQGDQCLEKTCGIQHSDLDQVSACPITNPPEWPPFLQLPAPQYRAVRTEFLPFSDVPNPSCRTNGSCPVTMLFTGTNHSFGQILSGNMIPSTFAINNSDFMGSLATNVLGSPSKTEYTNFLEPAFFSNLSIYYLQSQCTQNSTFSIPVNVSTTSRQQEVRCAQGVPLWRNSSSEVNNELFKGYRKGNTERQINEIAVGYDFLNSNGNIFNVSIWYNSTYKNDTGFDPIALARVPRSVNLVSNAFLQFLLEPGSKILFEFVKEMPKPETPIKFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYGYFLAISIIYMLCFVIFGSVIGLNFFTMNDYSIQFVFYFIYINLQISLAFLLASPFSNVKTATVIAYIGVFGTGLLGGFLFRFFVQQTSFPRGWIIVMELFPGFALYRGLYEFAESAFNGDALGTHGMRWGDLSDSSNGMKEVLVIISVEWILVLLFAYYVDQVLSSGSGRSLLFFLKGFQKKPSSSFRKPSIKRQGSKVFVDMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPAKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGSAFVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGTKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTASVDHEKDAENLVQQLSPNANKIYHISGTQKFELPKDEVRIANVFRAVETAKRNFTVSAWGLADTTLEDVFIKKRNVKTNVRLILFPFALCLLLVLIQKLVDIQLDKASNKCGCVCAKKQGDQCLEEVCGIQYSDFDQVGTCPLPNPLEWPPFLQLPAPQYRAVRTDFLPFSDFPNPSCRTNGSCPVTMLFTGTNNSFGQILSGNMIPSTFAINNSDIMGSLATNVLGSESMTENTNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVNVSTTSRQQEVRCAQGLQLWRNSSSEVNDELYKGYRRGNTERQINEISAGYDFLNSNAKIFNVSIWYNSTYKNNSGFGPIALARIPRSVNLVSNAYLKFLLGSGAKMLFEFVKEMPKPETAINFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVIYMLCFVIFGSVIGLKFFTMNDYSIQFVFYFIYINLQISLAFLLATLFSNVKTATVIAYIGVFGTGLLGGFLFQFFLQDTSFPRGWIIVMELFPGFALYRGLYEFSESSFNGDALGTNGMRWGDLSDSTNGMKEILIIMFVEWLLVLFFAYYIDQVLSSGSGKSPLFFLKRFQKKRSSSFRKPSIQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDDLRKIYPGTDGNPEKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSLDHEKDVENLVQKLSPNANKIYHISGTQKFELPKDEVKIANVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDTLS. 1859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03220 1858 Pfam ABC-2 family transporter protein 1242 1466 IPR013525 GO:0016020|GO:0140359
Seca4g03220 1858 Pfam ABC-2 family transporter protein 345 550 IPR013525 GO:0016020|GO:0140359
Seca4g03220 1858 CDD ABC_subfamily_A 631 852 - -
Seca4g03220 1858 CDD ABC_subfamily_A 1540 1761 - -
Seca4g03220 1858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1535 1764 IPR027417 -
Seca4g03220 1858 Pfam ABC transporter 649 793 IPR003439 GO:0005524
Seca4g03220 1858 FunFam ABC transporter A family member 7 616 892 - -
Seca4g03220 1858 SMART AAA_5 1566 1749 IPR003593 GO:0016887
Seca4g03220 1858 SMART AAA_5 657 840 IPR003593 GO:0016887
Seca4g03220 1858 FunFam ABC transporter A family member 7 1525 1801 - -
Seca4g03220 1858 Gene3D - 619 893 IPR027417 -
Seca4g03220 1858 Gene3D - 1528 1800 IPR027417 -
Seca4g03220 1858 Pfam ABC transporter 1558 1702 IPR003439 GO:0005524
Seca4g03220 1858 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1502 1852 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca4g03220 1858 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 864 IPR003439 GO:0005524
Seca4g03220 1858 ProSitePatterns ABC transporters family signature. 1675 1689 IPR017871 GO:0005524|GO:0016887
Seca4g03220 1858 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1536 1773 IPR003439 GO:0005524
Seca4g03220 1858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03220 Seca-Chr4 55282147 55305395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03220 603 875 Calmodulin-binding Proteins AT2G36910 23.077 2.15e-12 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03220 - - gmx:100805474 1610.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03220 4 55282147 55305395 Seca4g03220 4 55282147 55305395 ECH