Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03217 ATGGGAAAATCACCAGGAAAATGGATCAAAACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGACGAGAGAAGCTTGTTAATAAAAAGGAAGCAGTGGTTGCTTCTAATGTGTCGGATAATGGTTTGGCTTTAGAGCCAACCCTTGATAAGATTGCCAGACATGAGGAGGACCTAGAACAGGAGAATGAAGAATCAGAAAATCTTTCACCTGGGAATCAAGAAGTAGACAACATTGGATCTGTTGACCAAGATGCACCACCTGATCCGGAGAAAATCAGGCTGGAGGAAGCAGCAACTAAGGCACAGGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATCCGTGGGCACTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTGTATGTATGTGATTGTAAGGTTACAGGCACTTGTTCGTGGAGGGAGGGTTAGACAGTCCGATATTGGATTTGAAATCCATAAGAAGTGCAATCTATTTAAGCCTCTGGATGGCAAACTTGGTGAGTCTGTTCGTATTTCCACAAAAATTTCGAAACTGTCAGCAAATACTTTCATCTGTAAGGTTTTATTTGAGAATGATAATAAGCTTCTTTCTTCGTCAACTACAATAATGGCTCTGCACCTGCAATATGTTGGTGGGGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCATACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGAAATAATTCAATTGGAGAAGTTCAAATTAGCAAGTCAAAACGTACCAACAGGAAGCTTCCGATTGCAAATTTCGAATCAGTCCCAATACAAACAAATCCTGAACTTGAGAAACCAAAACGAAATTTCAGGAAAATCTCCAGCCAACCGTCAGATCCAGAGCAGGAAAATCCACAGAGTGAGCTTGAAAAGGTTAAACGAAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGTTATTCTGTCAGAAGTTGAATGTGAGACCCCAAAGCAGCATTTGGAACAGGCAACAGTTATTGCAGGTGATGCTGTTTCAGAACCGGTTGTCAATACAGCTAATGAAAAGATCAAGAAGGAAGCTACATTGATCATCTCCAATGTACCTGATGTAGAAATTACTCCAAAACCATCAGATAACAAGGAGGTGTCTGATATTCCAAGCAATGATCAAATGACTATAGAATCAGAGCCCTTGACAGAGACTATAACTAAAGAGAAAAACACTTCTGGTGACATTGTTAAAAATGAGCCAATCAATCTACCAGAGACTATCTTTAAAGATGAAAACTCTCCATTAACAAATGGAGATTTGACTCATAAGGAAGATCTAACAGGTAATGAAAACCAGAAATCTACCCGGAAAGCCTCAATTTTGGCAAAGCAGGAGCATGCAGAGAATGGTTTACAGAATAGTCCAACATTACCGAGTTATATGGCAGCAACTGAATCTGCCAAGGCTAAGTTGAGGACACAAGGGTCCCCGAGGTTTGGGCAAGATGGAAGTGAGAGAACCAACTCTGCTGGGCGACATTCTCTGCCATCTTCAACTAACAGTAAAATTAATTCACACTCACCTAGGACACACAGATCAGTTCAAGCAGGTGGCAAAGGGGGCCATAGAAGTGACAAAACTGCACCATCTTCTAGAGGTGGGAATGGTATGATACAGTTGTACTCTTTCCTCCATGGTGATTTGAAAATATGTGACATTATGATTTCACCTATAAAAATTACCTTTATTTTGAAGAGTTTTAAAACTGAATTGTGTCAGTTTGAGGGAAGGTTATTCAAGCAGAGTGGAGGAGGTAATCCGAGGAAGACTGGTTTTCTGAAGTTTAACATGAGGAGATCTAATTGGGGCTATCTCTGTGTGGGGTTACCTCTGAACAAAGATGTTGAAATGATAGGACCATAG 2004 0.4077 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKKEAVVASNVSDNGLALEPTLDKIARHEEDLEQENEESENLSPGNQEVDNIGSVDQDAPPDPEKIRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYVIVRLQALVRGGRVRQSDIGFEIHKKCNLFKPLDGKLGESVRISTKISKLSANTFICKVLFENDNKLLSSSTTIMALHLQYVGGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNNSIGEVQISKSKRTNRKLPIANFESVPIQTNPELEKPKRNFRKISSQPSDPEQENPQSELEKVKRNLRKIHNPVVENVILSEVECETPKQHLEQATVIAGDAVSEPVVNTANEKIKKEATLIISNVPDVEITPKPSDNKEVSDIPSNDQMTIESEPLTETITKEKNTSGDIVKNEPINLPETIFKDENSPLTNGDLTHKEDLTGNENQKSTRKASILAKQEHAENGLQNSPTLPSYMAATESAKAKLRTQGSPRFGQDGSERTNSAGRHSLPSSTNSKINSHSPRTHRSVQAGGKGGHRSDKTAPSSRGGNGMIQLYSFLHGDLKICDIMISPIKITFILKSFKTELCQFEGRLFKQSGGGNPRKTGFLKFNMRRSNWGYLCVGLPLNKDVEMIGP. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03217 667 Gene3D - 97 168 - -
Seca4g03217 667 PANTHER IQ-DOMAIN 5-RELATED 1 548 - -
Seca4g03217 667 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Seca4g03217 667 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Seca4g03217 667 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Seca4g03217 667 MobiDBLite consensus disorder prediction 404 485 - -
Seca4g03217 667 SMART iq_5 98 120 IPR000048 GO:0005515
Seca4g03217 667 SMART iq_5 121 142 IPR000048 GO:0005515
Seca4g03217 667 MobiDBLite consensus disorder prediction 256 331 - -
Seca4g03217 667 MobiDBLite consensus disorder prediction 70 84 - -
Seca4g03217 667 MobiDBLite consensus disorder prediction 60 94 - -
Seca4g03217 667 Pfam Protein of unknown function (DUF4005) 490 571 IPR025064 -
Seca4g03217 667 MobiDBLite consensus disorder prediction 524 559 - -
Seca4g03217 667 MobiDBLite consensus disorder prediction 410 444 - -
Seca4g03217 667 Coils Coil 49 73 - -
Seca4g03217 667 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Seca4g03217 667 MobiDBLite consensus disorder prediction 267 300 - -
Seca4g03217 667 MobiDBLite consensus disorder prediction 511 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03217 Seca-Chr4 55250012 55256303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03217 1 583 IQD Protein Family AT1G74690 44.302 1.72e-126 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03217 - - gmx:100786022 834.713