Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03213 ATGGCGATGGTATCTGCAGCATTTCACAAGATCAATAGTATTTGTGGAAGGAGGCAGAATTGGCATTTGAAAGTTAAGCTGGTTCAGGCATGGAATATGTGTGTTGTTGCCACCCCAAGTGATCCATACGCCATGCAAATGGTATTTTTGGATGAAGAGGGAGGGAAGATAGAGGCTATAGTGCAGAAGCAGTATATGAAGAAGTTTGCAGATTGCATGGTGGAGGGAGAGGTGTACAGGATTACAAACTTCGGTGTTTGTAAGAACAGAGGCAAATTTAGAGCGGCTGGACATGACTACAAGCTGTCCTTTACATCCTATACTAATGTTACTTTGTGCCAAGGTGTTCATATTGCTGGGCTAGGGCTCTCGCTGAAGAAGACTACTGACATCAAGAAAACAAAGGGATTTTCAGAGTACCTTGTGGATTTCATTGGAGTTGTAACTGCTGTCTCTGAGGAGCTGAATATAAACAAAGAAGGAAGGCAGACACGGCTAATGTTGATTGACTTTGTTGATGAATTTGGTAAGATTCGATGTGCTGTTTTTGGAGATCTTATTAATGTCGTTATGGATTTCCTGGCTCTCCGACAGATTGGGTTGCCTGTTGTTATAATTCAATTCGCTAAAGTTAATCTCTATAAAGGGGAGGTTGGGATTCAAAATGTGATGAATGCTTCAAAGATTTTGTGGAATCCAGAAATTCCAGAGGCAGTGGAGTTTAAGAATGGGCTAGCTGTCGATGAAATTGAAACTGAGGTAGCTATCTCAACCATTACTGATCGGCGACGTGCTCCATCCATGAGGGAGGAGTTCCTTAAACTATATCCAAAGAAATGGATTGGTCAACTCTACGATATGGTTGAGATTTCCTATCCTAATGGAAGGTACAAGGTTAAGCTATTGGTGTCAGATGGGAATGATAATGCCCATTTCATTCTGTGGGATTTGGACTGTTACTCATTGGTGAATCAAACCTGTCGACAGATGCTAGCTGATATTGAGGGTCAACCAGTTGGGTTCTTCCTAGAAGAAATACTTAACTTGGTGGGGAAAGAAATGTTGTTCCGAATTGAAAGCAGTGATGAAGATCTGTTAACATTTGATGATACTTTCAAGATAAAAAAGGTGTGTTTTGATGTGGATATAGTGGCTGAATATAAAGAAGTTGTTGATGATGAGACTCCCCTAAAGCTCAAGTTTTCTCCTGCCTTCACCAAGATAGCCGACTCTGATGCTAGTGGGGATGGAATTCAATTGTCCACCTGCTGCAAATCTATTGCTTCTGAGCTTGAGATTACCCCTCCATCATGTGTTGGATCTTCTTCCAATGTCGAAGAAAATGGTGGTGGTGGAAAAAGGGACATGGAAGAACATGAAGAGCCTCCACTGGAGAGGAAGAAGAGGTGGAGGGTTAGACCAGTGAAGGTGGAGAAGAACTAA 1443 0.4193 MAMVSAAFHKINSICGRRQNWHLKVKLVQAWNMCVVATPSDPYAMQMVFLDEEGGKIEAIVQKQYMKKFADCMVEGEVYRITNFGVCKNRGKFRAAGHDYKLSFTSYTNVTLCQGVHIAGLGLSLKKTTDIKKTKGFSEYLVDFIGVVTAVSEELNINKEGRQTRLMLIDFVDEFGKIRCAVFGDLINVVMDFLALRQIGLPVVIIQFAKVNLYKGEVGIQNVMNASKILWNPEIPEAVEFKNGLAVDEIETEVAISTITDRRRAPSMREEFLKLYPKKWIGQLYDMVEISYPNGRYKVKLLVSDGNDNAHFILWDLDCYSLVNQTCRQMLADIEGQPVGFFLEEILNLVGKEMLFRIESSDEDLLTFDDTFKIKKVCFDVDIVAEYKEVVDDETPLKLKFSPAFTKIADSDASGDGIQLSTCCKSIASELEITPPSCVGSSSNVEENGGGGKRDMEEHEEPPLERKKRWRVRPVKVEKN. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03213 480 CDD RPA1_DBD_A_like 23 110 - -
Seca4g03213 480 MobiDBLite consensus disorder prediction 450 468 - -
Seca4g03213 480 Gene3D - 121 252 IPR012340 -
Seca4g03213 480 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
Seca4g03213 480 MobiDBLite consensus disorder prediction 435 480 - -
Seca4g03213 480 Gene3D - 7 115 IPR012340 -
Seca4g03213 480 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca4g03213 480 CDD RPA1_DBD_B_like 143 242 - -
Seca4g03213 480 Gene3D - 286 393 IPR012340 -
Seca4g03213 480 Pfam Domain of unknown function DUF223 47 117 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03213 Seca-Chr4 55093094 55095440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03213 49 242 Core DNA Replication Machinery Family AT2G06510 25.616 9.29e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03213 - - lja:Lj6g3v0884310.1 285.034