Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03212 ATGGAGTTTGATTCGGAAAGATCTGGTCATGAAGGTGAAGGAGCTAAGGCTGAGAAGAGAAGAGAATCTAGTGTTGGTGATGGAGAAGATCGTCGTGAACAAGAGGATCTTATACAGGAACCAGCCATGACTAATATCGAAAGATCCACGGCCGAGCCAAATGTATCCTCAACCAAGAAGGAAGAGGAGGTTGATGAACTTGAAAGTGCCAAAGCTGAAATGGGTGGAGTGATAGAAGAAAATCAACGATTGAAGATGTGTTTGAACCGAATACTGAATGATTACCGTACACTGCAAATGCAATTCCACAATATAGTTGAACAAGAGACAAAAAATTATTCAGATCATAAAGAAAAAACCAATGACCATAATCAAGAAACAATAGACGAACCAGAGCTTGTTTCCCTGAGTCTTGGAAGACTTCCAAGAAACAACATTGAGAAATCTAAAGTCTCTAAACCATTGAAAGAGGAAGAAAATAAAGAAGGCTTAGCTCTTGGACTTGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAACATTTGCCAAATGCAAGCCCTGCCAATAGTTCTGAAGTACCAAAGGAAGAAGCTGGGGAGACTTGGCCACCAAGTAAGGCTCAAAAGACAATTAGAGTCACTGCAGAGGATGAAGTTTCTCAACAAAATCCTGCCAAGAAAGCTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGTCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCCGTGAGAAAACAGGTGCAAAGATGTGCACAGGACATGACCATTTTAATCACCACTTATGAAGGGAACCACAATCATCCTCTGCCTCTTTCAGCTACTGCAATGGCTTCCACCACTTCTGCAGCTGCTTCCATGCTATTATCTGGCTCATCAACCTCTCACTCTGGATCAATACCTTCAACAACCATGACCACCACATCTTCTGCTGATCTTCATGGAATGAACTTTTATCTCTCAGATAGTTCCAAATCAAAGCAATTCTACCTGTCCCATCCTGCACTATCACCCTCCCCTTCACACCCAACCATTACTCTTGACCTCACTTCCAATCCAGCCTCATCCTCAGTTCCTTTTGGTAGATTCACTTCAAACTACAACCCCCCAAGATACCCTTCATCCACAAGCCTCAACTTCAGTTCCTCTGAATCCAATACAATATCTTGGAACAATGGTTTACTCAGCTACAGTCAACAACCATACAACAACAGGAACCTCCTTAGCTCCTTAAACCTTGGAAGACAACCAATAATGGAAAACAATATCTTCAACTCCTACATGCAAAGAAACAACAACAACAACAATAATCCAATTCCAACCCCACCTCAACATTCTCTACCAGCTGACACAATAGCTGCAGCAACAAAAGCAATCACTGCTGACCCAACTTTTCAGTCAGCTTTGGCAGCGGCGCTTACATCAATAATTGGCACAGGAAGTGGCACTTCTGGAAGCACACAAGGAAACCACAATATGGGAGAAAATTTGGGCCATAAAACGAAATGGGGTGAGTTGTTTTCGTCATCTTCTACGACTTTGCCTGCTTCGAGTTCCAAAGTCAGTGGCTGTGCATCAAGCTTCTTGAACAAAGCACCTGCTAGTAATACACAGACGGGAAGTTTGATGTTTCTACAGCCACCTTTGCCATTTTCTAGCACCAAAAGTGCGTCTGCGTCTCCTGGTGATGATAGAGACAACACCAATTAA 1809 0.4268 MEFDSERSGHEGEGAKAEKRRESSVGDGEDRREQEDLIQEPAMTNIERSTAEPNVSSTKKEEEVDELESAKAEMGGVIEENQRLKMCLNRILNDYRTLQMQFHNIVEQETKNYSDHKEKTNDHNQETIDEPELVSLSLGRLPRNNIEKSKVSKPLKEEENKEGLALGLDCKFETSKSGSTTEHLPNASPANSSEVPKEEAGETWPPSKAQKTIRVTAEDEVSQQNPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMTILITTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGSIPSTTMTTTSSADLHGMNFYLSDSSKSKQFYLSHPALSPSPSHPTITLDLTSNPASSSVPFGRFTSNYNPPRYPSSTSLNFSSSESNTISWNNGLLSYSQQPYNNRNLLSSLNLGRQPIMENNIFNSYMQRNNNNNNNPIPTPPQHSLPADTIAAATKAITADPTFQSALAAALTSIIGTGSGTSGSTQGNHNMGENLGHKTKWGELFSSSSTTLPASSSKVSGCASSFLNKAPASNTQTGSLMFLQPPLPFSSTKSASASPGDDRDNTN. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03212 602 Pfam WRKY DNA -binding domain 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g03212 602 SMART WRKY_cls 243 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g03212 602 ProSiteProfiles WRKY domain profile. 238 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g03212 602 MobiDBLite consensus disorder prediction 54 68 - -
Seca4g03212 602 MobiDBLite consensus disorder prediction 175 222 - -
Seca4g03212 602 FunFam probable WRKY transcription factor 31 228 305 - -
Seca4g03212 602 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 521 IPR044810 GO:0003700
Seca4g03212 602 MobiDBLite consensus disorder prediction 1 68 - -
Seca4g03212 602 SUPERFAMILY WRKY DNA-binding domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g03212 602 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g03212 602 MobiDBLite consensus disorder prediction 572 602 - -
Seca4g03212 602 MobiDBLite consensus disorder prediction 175 193 - -
Seca4g03212 602 Gene3D WRKY domain 227 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g03212 602 Coils Coil 106 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03212 Seca-Chr4 55046819 55051384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03212 74 512 WRKY Transcription Factor Family AT5G15130 41.494 4.94e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g03212 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03212 - - gmx:100804403 689.108