Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03205 ATGGCCACTGCGACTGGGAGGATCTTTTGCGGTGGTGGTAGTCGTGTAAATTCTTCCAATTTGAGTTCTCTGCTTCCCAATCGAACCGCTCCTTCCACTTCTCAGCCTCTTCATTCTCTTTTCCTTTCTGCCTCTTCTTCTTCTCCTTTCCTCGGTTCGAGTTCTATGGTAAGTTTTGAAGGTGTTCAAGGAGGGAAAGGGTGTAATGGCTCGTTCTTCCGCCATTATGACCCTGATGAAAATGGGGACGATGACATCGACGACTACTTCCATCAACCTGAGAAGAAGCGTCGACTCTCGATAGACCAAGTTCATTTCCTTGAGAAAAGCTTCGAGGAGGAGAACAAGCTCGAACCTGAAAGAAAAACTCGTCTCGCCAACGAACTTGGTTTGCAACCCCGGCAAGTGGCGATTTGGTTTCAGAACCGCCGAGCTCGCTGGAAGACGAAACAGATGGAGAAGGACTATGATTCCCTGCAGGCTAGCTATAACGATCTTAAGGCCAACTTTGACAACCTTTTGAGGGAGAATGATAAATTGAAAGCAGAGGTGGTGGCAAGCCTCACGGAAAAGGTGATTGGAAGAGATAAACAAGAGGGAGACTCTGAACAGGGTAAAACAAACAGGTTGCAGGAGTCACTGCAAAAGCCTTTGATTGATTCAGCCTCGGAGGGTGAAGGATCCAAAGTGTCAGTTCAACAAGAAGACAATAGTTCAGCCAAGAGTGACATGTTTGATTCGGAGAGTCTGCATTACACGGATGGAGTTCACTCTGCATTGCTGGAGACAGGTGATTCATCCTTTGCATTTGAACCTGATCAGTCTGATTTGTCACAGGATGAAGAAGACAACTTGAGCAAGATCCTATTGCCTCCATACATCTTCCCCAAACTTGAAGATGTTGATTACTCCGATACGCCTCATAGTTCTTGTAATGTTGGATTTCATGAGGAAGATCATGCCATATGGTCCTGGTCTTACTGA 984 0.4614 MATATGRIFCGGGSRVNSSNLSSLLPNRTAPSTSQPLHSLFLSASSSSPFLGSSSMVSFEGVQGGKGCNGSFFRHYDPDENGDDDIDDYFHQPEKKRRLSIDQVHFLEKSFEEENKLEPERKTRLANELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANFDNLLRENDKLKAEVVASLTEKVIGRDKQEGDSEQGKTNRLQESLQKPLIDSASEGEGSKVSVQQEDNSSAKSDMFDSESLHYTDGVHSALLETGDSSFAFEPDQSDLSQDEEDNLSKILLPPYIFPKLEDVDYSDTPHSSCNVGFHEEDHAIWSWSY. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03205 327 FunFam Homeobox-leucine zipper protein HAT5 88 152 - -
Seca4g03205 327 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Seca4g03205 327 SMART HOX_1 93 154 IPR001356 GO:0003677
Seca4g03205 327 CDD homeodomain 95 151 IPR001356 GO:0003677
Seca4g03205 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 82 245 IPR045224 GO:0003700
Seca4g03205 327 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Seca4g03205 327 Pfam Homeobox associated leucine zipper 150 191 IPR003106 GO:0006355|GO:0043565
Seca4g03205 327 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Seca4g03205 327 Gene3D - 89 158 - -
Seca4g03205 327 MobiDBLite consensus disorder prediction 226 246 - -
Seca4g03205 327 Coils Coil 149 183 - -
Seca4g03205 327 SUPERFAMILY Homeodomain-like 77 152 IPR009057 -
Seca4g03205 327 MobiDBLite consensus disorder prediction 195 246 - -
Seca4g03205 327 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Seca4g03205 327 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03205 Seca-Chr4 54941589 54943758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03205 93 325 Homeobox Transcription Factor Family AT3G01470 41.880 4.89e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g03205 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03205 - - gmx:732618 454.136