Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03191 ATGGGCATGGATTACTATAACATACTGAAAGTGAATCGAAACGCCAGCGACGAGGATTTAAAAAAGGCCTACAAGAGGCTCGCCATGATATGGCACCCTGACAAGAACCCCGTTAACAAGAGCGAGGCCGAAGCCAAATTCAAGCGAATCTCCGAAGCCTACGACGTTCTCAGCGACCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCACTCAAGTCTGGTCAGTTTCCGCCACCTCCGCAATCTTCTTCTTCTTCTTCTTCATCCTCTTCACGCGCCTACCAGAACCACCACCAACGCCAAAACCCTACCTTCCGCTTCAACCCCCGCGACGCCGACGACATTTACGCCGAGTTCTTTGGCCCCGACGGCGCTGACGCCGGCGGAGCCGGGCCCCGCAGGGATGGGTTCTTCAGGACCTCAAATGGCGCTGCGTTTGGAGGACCGGGAAGGAAGGCACCGGCGGTGGAGAACGTGTTACCGTGTAGCTTGGAAGACCTTTACAAAGGTGTCAAGAAGAAGATGAAGATCTCAAGGAATGTCTATGACGCTTTTGGCAAGTGTCGGAGTGTGGAGGAGATTTTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGATCCTGGTGTCATCCCTGCTGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGTAATGATTTGGTGATCAACCAAGAGATAACTCTTCTTGAGGCCCTTACAGGTAAAACCTTGAACCTCACTACCTTGGATGGAAGGAGTCTCATGATCCCATTGACAGATATCGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCCATATCAAAAGAACCTGGGAGGAAGGGGAATTTAAGAATTAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAAAAATCTGATCTGAGGAGAGTTTTGGGTGGAATCTCATAA 1011 0.4955 MGMDYYNILKVNRNASDEDLKKAYKRLAMIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSSSRAYQNHHQRQNPTFRFNPRDADDIYAEFFGPDGADAGGAGPRRDGFFRTSNGAAFGGPGRKAPAVENVLPCSLEDLYKGVKKKMKISRNVYDAFGKCRSVEEILTIEIKPGWKKGTKITFPEKGNQDPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLNLTTLDGRSLMIPLTDIVKPGAEVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGIS. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03191 336 Pfam DnaJ domain 4 67 IPR001623 -
Seca4g03191 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca4g03191 336 CDD DnaJ 4 59 IPR001623 -
Seca4g03191 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 326 IPR008971 GO:0006457|GO:0051082
Seca4g03191 336 MobiDBLite consensus disorder prediction 79 109 - -
Seca4g03191 336 FunFam DnaJ subfamily B member 13 3 133 - -
Seca4g03191 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 332 - -
Seca4g03191 336 FunFam DNAJ heat shock family protein 237 332 - -
Seca4g03191 336 Gene3D - 158 236 - -
Seca4g03191 336 FunFam Dnaj homolog subfamily b member 155 236 - -
Seca4g03191 336 Gene3D - 238 318 - -
Seca4g03191 336 CDD DnaJ_C 163 320 - -
Seca4g03191 336 SMART dnaj_3 3 62 IPR001623 -
Seca4g03191 336 MobiDBLite consensus disorder prediction 74 112 - -
Seca4g03191 336 Gene3D DnaJ domain 2 133 IPR036869 -
Seca4g03191 336 SUPERFAMILY Chaperone J-domain 3 83 IPR036869 -
Seca4g03191 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 238 IPR008971 GO:0006457|GO:0051082
Seca4g03191 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca4g03191 336 Pfam DnaJ C terminal domain 162 317 IPR002939 -
Seca4g03191 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca4g03191 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca4g03191 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca4g03191 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03191 Seca-Chr4 54651922 54659991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03191 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 5.11e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03191 K09510 - gmx:100781572 557.37