Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03187 ATGGGGCAAAAAAAGCGAAACAGTGCTCCGCGCTCCAAATCATCGCTGGCGTCGGCACAGGCGACCGCCGTCGCCACCACAGTTTCGGCGGAAGGGGAGTCAAACACGGTTGCAGATCAAAGTCCCGATAAGAACGAGTTCACGACTCCTCAATCTGCTTTTCCGTCTCACTCAGCAATCAAGGCGGAATGCGAGCGAGCCCTAACGGCGCTCCGGCGCGGCAACCACACGAGGGCGCTGAAACTAATGAAGGATTGCTGCTCCCGCCATGAGAACTCGCCTCACTCGGCGTTCGTCCACCGAGTCCACGGCACTGTGTGGGTGAAGGTTGCGGCGGTTATGGACGACCCGAGCGCGAAGCAGAGGCACTTGAAAAACGCTGTCGAGTGCGGCAGAAAAGCCGTTGAACTCTCCCCAAACTCGATCGAGTTTGCGCACTTTTATGCGAGCGCGCTGTTCGACACGGCGAACGAAGGTAAAGAGTTCGAGGAAGTGGTGCACGAGTGCGAGAGGGCACTCGCGGTTGAAAAACCCAACGACCCTGCGAAGGAGAGCTTACAGGACGAGAGCCAGCAGAAGATACCGACGGCGGAGGCACGTGTGTTGCACGTGCAGAACGAACTCCGACAACTGATTCAGAAGGCCAACATTGCTTCCTTGTCCAGCTGGATGAAGCACTTGGGCAATGGGGAGGAGAAGTTTCGGTTGATTCCTATACGGAGGCCCACCGAGGACCCAATGGAAGTGAGGGTAGTTCAGTCCAGAAGGTCCAATGAGATCAAGAAGGTGACCAAGACGCCTGAAGAGAGGAGGAAAGAAATCGAAGTTCGAGTTGCAGCTGCAAGGTTGTTGCAACACAAGTCAGAGTCACCGCAATCTCAGAGCGAAGGAGATAGGGATGAGAGGACGACTTCTTCTGGTCATAGGAGGAAGAATGGACATGCCAGAAAGAATGGAACTTCGGGTTTAGTACAGTCATATTGGGATTCGATGAGTTTGGATATGAAGAAGGGCTTGCTTAGGATTAGAGTTTGTGATCTCATGTCACACTTTGGGTCTTTGAAGGATACTTTGCCAAAGGAGGTTTTATCAGAGGCTTTGTCCTATGCCGAGGTTAATAAAACGTGGAAGTTCTGGCTTTGCTGCCGTTGTGATGAGAAATTTCCGAATTCAGAGTCTTTCGGGCAGCACGTTGTGCAGGAACACATGGGGAACCTGTTGCCGAAAATGCAGAGACTTTTGCCCCAGAATATTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGACGTCTCTGCAGCTGTTAAAATGCTTGAAAATAGAGCAAAATTCAGAGATTCTTTATTCCCCAGGTATTCCTACTTGGGTCATTATGGAGAGGAGTACATGGATTGCTTTAAAGACACAATCTATTCTTGCCATGATAATGGAAGTACAGGGTATAGTCTTCATAATTGTACAACTGGAAGCAGTAAATATTGTAAAATTGCAGAAAGTGATATTAGAGGTGGAGTTGAAGTCCAAGGATCTACATTATGTCCCCTTGCTGATAGTTGGCCAATATCTGATGACTCTGAGCGTTCAAAACTTCTAGGGAAAATTCGTGCAGTATTTGAGATGCTTATTAGACACAAATATCTTGCTGCTAATCATCTAAACAAGGTCATACAATTTACTATGGATGAGATACAGGGCCTTCTTGGCGGTTCTCAACTCCTAAACCATGGTGTGGACCAAACACCAATGTGCATGTGCTTTCTGGGAGCTGCTCAGCTTAGGAAAATTCTCCAATTTTTGCAGGAGTTATCTCATGCTTGTGGTTTGGGTAGATATACTGACAAAACTAGTAGTCCCATGAATGATTTGCACAATATCAGTCAAGTTCCTGATATCAAAGAGAGGATTGTTCTTAATGGAGATGCATCATGCCTCCTTCTAGATGAGTGTTTACTGCCTACACAAGTCACTCCTGGTACAGCTCAGGGGGTTGTATTGGATGATGCAACTGCCCCAACTTCTCCTGATGGGGTTTCACACAATACCGATGCTTTGCTATCCTGGATATTTTCCGGTTCACCTAGTGGGGATCAATTGACATCATGGATGCGTACAAAAGAAGATAAAAGATGTCAAGGAATAGAAATTGTCCAGATGCTCGAGAAGGAGTTTTATCACCTCCAGGGTCTCTGTGAGAAGAAGTGTGATCGTGTAAGTTATGAGGAAGCTCTGCAGGAAGTAGAGGATATTTGTCTCCAAGAAGGTAAGAAGATGGAAAATGTTGGTGAATTTGTCCAGCGAAGCTATGAGTCTGTCTTAAGAAAGAGGAGAGATGAGCTCATTGAGAATGAAAATGATGTGATGTATGTTAGCAATAGGTTTGAGTTAGATGCTATTTCAAATGTTTTGCAAGAAGCAGAAGCAATTAATGTTAGTCAATTTGGTTATGAGGAAACTTATGCTGGTGTGACTTCTCAGCTATGTGATTTGGAATCTGGTGAAGATGAATGGAGAATGAAAGAATATTTACATCAAATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAGGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACAAATCATGAGAAATGTTACAGAAATGCAGCAATTGGAACTCAAACTTGGGCCTAGTTCTGCTTATGATTATCGAGTGATATTATTGCCTCTAGTGAAGTCTTACCTAAGGGCTCTTTTGGAAGATTTGGCTGAGAAAGATGCAACAGAGAAGTCTGATGCCGCAAGAGAAGCATTGTTGGCTGAACTCGCCCATGATTCTAAGAAGATTGTTAAAGGGGGAAGCGAGAACACAAGACATATGGAGAAGACAAAAGATAAAAAGAAGAATAAAGATCATAGAAAAACAAAAGATTTAAATGTGATCATCTTGCACATTGAATTCTTTCATATTGGGCTATATTCCATTTCCTATCCAGTTTCACCTGATAGCAACTATCAAGATTCTGAGGTGGTTGTTTCTATGAATGGTGATGGCTTTGATCAACAGGAAGAGGAATTTAGACGTAAAATTGAACTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGGAGGATAGAAAATGAAGCTAAACAGAAGCTCCTTGCTGAGTTACAAAAGAAATCATCTGGGACATATTTAGAGAAAGCAGCAGACAGGCCTCAGGATTATCAATTGAAGGTGGTTTCTGGTGGCCCAGATGTACATGAACATATAAGAGCACCTATACAGGTGCAATTGGCAGAGGAGAATGGGTACCCAGGCAATCTGGATGGTGTGCTTATTACCAAAACAAATGGTTCAATGGGGCCAATTAAATCTTCAGCTGATTCAGCTGCCCAAAAGATTCATTATATGCATCATTCAAAAGCTAAACAAGATCTGGCTAATGGACTAGTTGCAGAGAACGGTTTTCAATTGCCTGATCGGCGCTCAGGAAAAAAACATAAGCAGCATAAGAATCCTTCCAGATTGGTTGATGGAAAGTTTGAACCTTTTGCGTTGGAAAAACAGAATGAGGTTACACATAATGGCAATCACTTAAGACAGCAGATTAAAGTCCATTACAACCAAGAGGCTAACAATGATTGGGGGGACAATGGATCAAAGAAGGTGAAAGTGTTGCCAGTTGAAGATGATGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTATGCCAAAGTCTAGATATGCATCAAGCACATAGGGAAGTGCCTTCAGTTTCCAGTTTGAGAACGTCTCAGACAGCTTCTTCAGAAGTAGATAGAGTGGGCTTTCCAGTGGAGGAAGAAACAACTGAGAATGTAAATGGAACTATCCTGATTGGTACTGGGCTAAAAAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCACTGTGGCATTTAAGACACTTCCGGGAGGAATTTCTTGGCAGATCAAAATCAGAGCATGATCATGTGGGTAGTCCTTGTGTTGTCTGTGCATTGTATGACATCTTTACTGCCATGGATGTTGCATCAAAGGATTCCAGGAGAGAAGCAGTAGCACCTACCTCCCTGAGGATAGCCCTTAGCAATCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTAGCAGTGATATTTGACTGCCTCCATCGATCATTCACTTGTGGTTCAAGTGTTTCTGATTCAGAATCAGTAGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAACAGTACTTGTATAGTACATTCAGTTTTTGGAATGGACATTTTTGAACGAATGAACTGCTATCACTGTGGTCTTGAGTCAAGGCACTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTTCGGACAATGAAGGTTATGTGCCCTGAAAGCTCCTTTGATGAGCTTTTGAATTTTGTGGAGATGAATGATCAGTTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACTCCACCACATGTTTTCATGACAGCTCCTATATGTTTGGAATTTACAGTTCTTGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACTGCAACTGTTGAAGCCCTGAGCACTGAGATGGATATCAGTATCCTTTATCGTGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGGCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGATAATTGGTGGATGGGCTGATGTTCTTAAAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4914 0.4316 MGQKKRNSAPRSKSSLASAQATAVATTVSAEGESNTVADQSPDKNEFTTPQSAFPSHSAIKAECERALTALRRGNHTRALKLMKDCCSRHENSPHSAFVHRVHGTVWVKVAAVMDDPSAKQRHLKNAVECGRKAVELSPNSIEFAHFYASALFDTANEGKEFEEVVHECERALAVEKPNDPAKESLQDESQQKIPTAEARVLHVQNELRQLIQKANIASLSSWMKHLGNGEEKFRLIPIRRPTEDPMEVRVVQSRRSNEIKKVTKTPEERRKEIEVRVAAARLLQHKSESPQSQSEGDRDERTTSSGHRRKNGHARKNGTSGLVQSYWDSMSLDMKKGLLRIRVCDLMSHFGSLKDTLPKEVLSEALSYAEVNKTWKFWLCCRCDEKFPNSESFGQHVVQEHMGNLLPKMQRLLPQNIDNEWIEMILNCSWKPLDVSAAVKMLENRAKFRDSLFPRYSYLGHYGEEYMDCFKDTIYSCHDNGSTGYSLHNCTTGSSKYCKIAESDIRGGVEVQGSTLCPLADSWPISDDSERSKLLGKIRAVFEMLIRHKYLAANHLNKVIQFTMDEIQGLLGGSQLLNHGVDQTPMCMCFLGAAQLRKILQFLQELSHACGLGRYTDKTSSPMNDLHNISQVPDIKERIVLNGDASCLLLDECLLPTQVTPGTAQGVVLDDATAPTSPDGVSHNTDALLSWIFSGSPSGDQLTSWMRTKEDKRCQGIEIVQMLEKEFYHLQGLCEKKCDRVSYEEALQEVEDICLQEGKKMENVGEFVQRSYESVLRKRRDELIENENDVMYVSNRFELDAISNVLQEAEAINVSQFGYEETYAGVTSQLCDLESGEDEWRMKEYLHQMDGCIEIAIQKLKEHLSIELSKIDAQIMRNVTEMQQLELKLGPSSAYDYRVILLPLVKSYLRALLEDLAEKDATEKSDAAREALLAELAHDSKKIVKGGSENTRHMEKTKDKKKNKDHRKTKDLNVIILHIEFFHIGLYSISYPVSPDSNYQDSEVVVSMNGDGFDQQEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQKLLAELQKKSSGTYLEKAADRPQDYQLKVVSGGPDVHEHIRAPIQVQLAEENGYPGNLDGVLITKTNGSMGPIKSSADSAAQKIHYMHHSKAKQDLANGLVAENGFQLPDRRSGKKHKQHKNPSRLVDGKFEPFALEKQNEVTHNGNHLRQQIKVHYNQEANNDWGDNGSKKVKVLPVEDDEEERFQADLKKAVCQSLDMHQAHREVPSVSSLRTSQTASSEVDRVGFPVEEETTENVNGTILIGTGLKNEVGEYNCFLNVIIQSLWHLRHFREEFLGRSKSEHDHVGSPCVVCALYDIFTAMDVASKDSRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTCGSSVSDSESVESNCMGSWDCANSTCIVHSVFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCPESSFDELLNFVEMNDQLACDPEVGGCGKLNHIHHFLSTPPHVFMTAPICLEFTVLGWQNTCESADDITATVEALSTEMDISILYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLKMCERGHLQPQVLFFEAVN. 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03187 1637 Coils Coil 1017 1051 - -
Seca4g03187 1637 MobiDBLite consensus disorder prediction 1 54 - -
Seca4g03187 1637 Pfam Protein of unknown function (DUF627) 66 176 IPR006866 -
Seca4g03187 1637 Pfam Ubiquitin carboxyl-terminal hydrolase 1297 1612 IPR001394 GO:0004843|GO:0016579
Seca4g03187 1637 MobiDBLite consensus disorder prediction 945 959 - -
Seca4g03187 1637 MobiDBLite consensus disorder prediction 292 308 - -
Seca4g03187 1637 ProSitePatterns Zinc finger C2H2 type domain signature. 381 402 IPR013087 -
Seca4g03187 1637 Pfam Protein of unknown function (DUF629) 324 855 IPR006865 -
Seca4g03187 1637 Gene3D Tetratricopeptide repeat domain 47 218 IPR011990 GO:0005515
Seca4g03187 1637 MobiDBLite consensus disorder prediction 1157 1176 - -
Seca4g03187 1637 MobiDBLite consensus disorder prediction 945 967 - -
Seca4g03187 1637 CDD Peptidase_C19 1387 1634 - -
Seca4g03187 1637 MobiDBLite consensus disorder prediction 283 321 - -
Seca4g03187 1637 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1296 1636 IPR028889 -
Seca4g03187 1637 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1636 - -
Seca4g03187 1637 SUPERFAMILY Cysteine proteinases 1296 1634 IPR038765 -
Seca4g03187 1637 Gene3D Cysteine proteinases 1281 1635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03187 Seca-Chr4 54582089 54592311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03187 55 1634 C2H2 Transcription Factor Family AT3G47890 55.763 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03187 - - adu:107493676 2278.83