Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03186 ATGTGGTTATGCTTTTCTGGTGGAAGATGGAGCGAGAGGAGTGTGTTTCCTGTGGTGTGGAATTGGGCGGTGGGGAACCGAACATGCGAAGAAGCTCAGAAGGAGCTTTTGAGTTATGCGTGTAAAGCAGACAACAGTGAATGTTACAATTCAGTGGAAGGACCCGGTTACCTTTGCAACTGCTCACATGGTTTTCGAGGAAATCCTTACCTCCCTCATGGCTGCCAAGATGTTAATGAATGCATGGAATCCAATGACTGCATTAATGGGGCGAAATGCAATAACTTTCCTGGGATCTACAACTGTACATGCCCGGAAGGATATGAAGGAGACGGAAAAAATGATGGAACAAGATGCAGTCCAAAATCTAGTAACAATTCCAAGAAAGAGATCGTACTGATAACTTCTTTGAGTGTGAGTGGAATTGTGTTAACACTACTCGTGGGAAGCTTTTATATGTATTGGGCATTGAAGAAAAGAAAGCTTATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCCTATTGTTACAACAGCAAATTGCTAGGCATAAAGGGTCAACTGAAATGGCTAAAGTCTTCACTATAGAGGAGCTAGAGGAGGCCACCAACAACTTTGATGAAAGCAAGATCCTAGGCCAAGGTGGCCAAGGAACAGTTTACAAAGGAGTATTACTAGATAACAAAATTGTAGAAATAAAAAAGTCAAAATTAAAAACAGAAGTTCCCTTGCTTGTTTATGAATTCATCCCCAATGGTACTCTTTATGAGTATCTTCATAATCAAAACCAGGCTTTAAATCTTACATGGAAAACAAGATTGAGAATAGCAACAGAAACTGCTGGAGCCCTGGCATATTTGCATTATGCTACCTCTGCACCAATCATACATAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCACTACAAAGGTTTCTGATTTTGGAACTTCTAGAATTATTCCTCTTGATCAAACTCAATTAACCACTTTGGTGCAGGGGACATTGGGGCCAGAGGCTGATAGAAATCTTGCAGTGTACTTTGCTTCTTCAATGAAAGAGGGTCGACTACTTCATATCGTGGAGAACCACATGATAGATAAGGAAAATGTTGAGAAACTAATTGGAGTTGCCAATATTGCAATACGGTGTTTAATGGTGAAGGGAGAGGAGAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGACTAAGAGTTATGGAAAAGAACAAATATGAAAGTGTTAATTTATCTTCAGAAGAGATTGGAAACTTGCTCAAAGCAGCACCATTTGTTTCCAATGTTGAAGATGGCGCTGGTGGAAGTGGCATCACTCCTGGACCTGGTTTTGATAGTTTAAATTGTATTTCAATATCATTGAGTGGTGGAAGATGA 1410 0.3972 MWLCFSGGRWSERSVFPVVWNWAVGNRTCEEAQKELLSYACKADNSECYNSVEGPGYLCNCSHGFRGNPYLPHGCQDVNECMESNDCINGAKCNNFPGIYNCTCPEGYEGDGKNDGTRCSPKSSNNSKKEIVLITSLSVSGIVLTLLVGSFYMYWALKKRKLIKLKEQFFQQNGGLLLQQQIARHKGSTEMAKVFTIEELEEATNNFDESKILGQGGQGTVYKGVLLDNKIVEIKKSKLKTEVPLLVYEFIPNGTLYEYLHNQNQALNLTWKTRLRIATETAGALAYLHYATSAPIIHRDVKTTNILLDHNLTTKVSDFGTSRIIPLDQTQLTTLVQGTLGPEADRNLAVYFASSMKEGRLLHIVENHMIDKENVEKLIGVANIAIRCLMVKGEERPTMKEVAMELEGLRVMEKNKYESVNLSSEEIGNLLKAAPFVSNVEDGAGGSGITPGPGFDSLNCISISLSGGR. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03186 469 SUPERFAMILY Protein kinase-like (PK-like) 190 412 IPR011009 -
Seca4g03186 469 Pfam Protein tyrosine and serine/threonine kinase 230 329 IPR001245 GO:0004672|GO:0006468
Seca4g03186 469 FunFam Fibrillin 2 76 115 - -
Seca4g03186 469 Pfam Calcium-binding EGF domain 77 119 IPR001881 GO:0005509
Seca4g03186 469 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 93 104 IPR000152 -
Seca4g03186 469 SMART egfca_6 77 120 IPR001881 GO:0005509
Seca4g03186 469 Gene3D Phosphorylase Kinase; domain 1 178 250 - -
Seca4g03186 469 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 345 413 IPR045274 GO:0007166
Seca4g03186 469 ProSitePatterns Calcium-binding EGF-like domain signature. 77 102 IPR018097 GO:0005509
Seca4g03186 469 CDD EGF_CA 77 111 - -
Seca4g03186 469 ProSiteProfiles EGF-like domain profile. 77 120 IPR000742 -
Seca4g03186 469 Gene3D Laminin 27 119 - -
Seca4g03186 469 Gene3D Transferase(Phosphotransferase) domain 1 343 430 - -
Seca4g03186 469 Gene3D Transferase(Phosphotransferase) domain 1 251 342 - -
Seca4g03186 469 SUPERFAMILY Growth factor receptor domain 27 124 IPR009030 -
Seca4g03186 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Seca4g03186 469 SMART egf_5 80 120 IPR000742 -
Seca4g03186 469 SMART egf_5 28 76 IPR000742 -
Seca4g03186 469 ProSiteProfiles Protein kinase domain profile. 140 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03186 469 SMART serkin_6 207 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03186 469 FunFam Wall-associated receptor kinase 2 27 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03186 Seca-Chr4 54543761 54555650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03186 16 469 Receptor kinase-like Gene Family AT1G21230 38.520 7.49e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca4g03186 PK_Tyr_Ser-Thr 2.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03186 - - gmx:100798027 605.134